miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6973 5' -57.6 NC_001875.2 + 41059 0.66 0.823838
Target:  5'- aGCgGCGUGGUCGUGcacGCCGUaAGGu -3'
miRNA:   3'- -CGgUGCACUAGCGCcgaCGGCA-UCCu -5'
6973 5' -57.6 NC_001875.2 + 128747 0.66 0.815293
Target:  5'- aGCCGCGccccggCGCGuGCacGCCGUGGGc -3'
miRNA:   3'- -CGGUGCacua--GCGC-CGa-CGGCAUCCu -5'
6973 5' -57.6 NC_001875.2 + 122121 0.66 0.806584
Target:  5'- uGCCACGcuucGggCGCGGCgcgGCCGgcGc- -3'
miRNA:   3'- -CGGUGCa---CuaGCGCCGa--CGGCauCcu -5'
6973 5' -57.6 NC_001875.2 + 15193 0.67 0.779552
Target:  5'- cCCACGUGAUgGUGGCcaGCaCGUAcGGc -3'
miRNA:   3'- cGGUGCACUAgCGCCGa-CG-GCAU-CCu -5'
6973 5' -57.6 NC_001875.2 + 77042 0.67 0.779552
Target:  5'- aGCCGCG---UCGCGGUgcuagUGCCGcccgguUGGGAa -3'
miRNA:   3'- -CGGUGCacuAGCGCCG-----ACGGC------AUCCU- -5'
6973 5' -57.6 NC_001875.2 + 90032 0.67 0.770269
Target:  5'- gGCCGCGg---CGcCGGCgcgcgUGCCGgcGGAa -3'
miRNA:   3'- -CGGUGCacuaGC-GCCG-----ACGGCauCCU- -5'
6973 5' -57.6 NC_001875.2 + 61522 0.67 0.770269
Target:  5'- uCCGCGUGcUCGCgcuuGGCgGCCaucauGUGGGAc -3'
miRNA:   3'- cGGUGCACuAGCG----CCGaCGG-----CAUCCU- -5'
6973 5' -57.6 NC_001875.2 + 78051 0.67 0.76464
Target:  5'- uGCCAaGUGAgUCGUguuuaaaaaacgcguGGCUGCUGgAGGAg -3'
miRNA:   3'- -CGGUgCACU-AGCG---------------CCGACGGCaUCCU- -5'
6973 5' -57.6 NC_001875.2 + 38645 0.67 0.760864
Target:  5'- cGCCGCGU-AUUGCGcGCUGgCCGgacAGGc -3'
miRNA:   3'- -CGGUGCAcUAGCGC-CGAC-GGCa--UCCu -5'
6973 5' -57.6 NC_001875.2 + 112826 0.68 0.741726
Target:  5'- cGCgCACGUGcaaagcgcGUUGCGGCcugcgcgcacUGCCGU-GGAu -3'
miRNA:   3'- -CG-GUGCAC--------UAGCGCCG----------ACGGCAuCCU- -5'
6973 5' -57.6 NC_001875.2 + 36877 0.68 0.692381
Target:  5'- cGUCGuCGUGcgCGCGGCacaccGCCGgcAGGAa -3'
miRNA:   3'- -CGGU-GCACuaGCGCCGa----CGGCa-UCCU- -5'
6973 5' -57.6 NC_001875.2 + 37099 0.69 0.651956
Target:  5'- cGCCGCGUGGgugugcgggCGCGGCgccgcGCCGgcGu- -3'
miRNA:   3'- -CGGUGCACUa--------GCGCCGa----CGGCauCcu -5'
6973 5' -57.6 NC_001875.2 + 65384 0.69 0.651956
Target:  5'- cGCgCGCGUGGUgG-GGCUGaaagagaaCGUAGGAu -3'
miRNA:   3'- -CG-GUGCACUAgCgCCGACg-------GCAUCCU- -5'
6973 5' -57.6 NC_001875.2 + 98492 0.7 0.601128
Target:  5'- uGCCGCGUGcgUGauuGGCUGCCG-GGcGAc -3'
miRNA:   3'- -CGGUGCACuaGCg--CCGACGGCaUC-CU- -5'
6973 5' -57.6 NC_001875.2 + 56715 0.75 0.360957
Target:  5'- gGCCGCGcGAaacguaCGCGG-UGCCGUGGGAc -3'
miRNA:   3'- -CGGUGCaCUa-----GCGCCgACGGCAUCCU- -5'
6973 5' -57.6 NC_001875.2 + 83041 1.1 0.00146
Target:  5'- cGCCACGUGAUCGCGGCUGCCGUAGGAc -3'
miRNA:   3'- -CGGUGCACUAGCGCCGACGGCAUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.