miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6974 3' -44 NC_001875.2 + 12273 0.66 0.999999
Target:  5'- -cAAGCACUUGCAGGCcaccGUGUgcaGcCGGc -3'
miRNA:   3'- gaUUUGUGAACGUUUGu---CAUAg--C-GCC- -5'
6974 3' -44 NC_001875.2 + 61612 0.66 0.999999
Target:  5'- --cGGCGCUU-CGGGCuGUGUCgGCGGc -3'
miRNA:   3'- gauUUGUGAAcGUUUGuCAUAG-CGCC- -5'
6974 3' -44 NC_001875.2 + 15789 0.66 0.999999
Target:  5'- -cGGGCACaaGCuGGCGGUGg-GCGGg -3'
miRNA:   3'- gaUUUGUGaaCGuUUGUCAUagCGCC- -5'
6974 3' -44 NC_001875.2 + 100633 0.66 0.999999
Target:  5'- --cGACACUcGCGccCAGUuuaguuUCGCGGc -3'
miRNA:   3'- gauUUGUGAaCGUuuGUCAu-----AGCGCC- -5'
6974 3' -44 NC_001875.2 + 57290 0.66 0.999999
Target:  5'- -aAAGCGCUccaacGCGAACGGgcgCGCGu -3'
miRNA:   3'- gaUUUGUGAa----CGUUUGUCauaGCGCc -5'
6974 3' -44 NC_001875.2 + 14678 0.66 0.999999
Target:  5'- aCUGGaauACGCUUGCGAGCGcgaccugCGCGa -3'
miRNA:   3'- -GAUU---UGUGAACGUUUGUcaua---GCGCc -5'
6974 3' -44 NC_001875.2 + 49313 0.66 0.999999
Target:  5'- -cAGACACUUGCAccugaaacuggcACAGUuccugcagCGUGGg -3'
miRNA:   3'- gaUUUGUGAACGUu-----------UGUCAua------GCGCC- -5'
6974 3' -44 NC_001875.2 + 54488 0.66 0.999998
Target:  5'- aCUucGCGCUUGac--CAGUuccagGUCGCGGu -3'
miRNA:   3'- -GAuuUGUGAACguuuGUCA-----UAGCGCC- -5'
6974 3' -44 NC_001875.2 + 104346 0.66 0.999998
Target:  5'- --cAACGCUUGCGgcauacgaaaugAACuAGUAUCaaguGCGGa -3'
miRNA:   3'- gauUUGUGAACGU------------UUG-UCAUAG----CGCC- -5'
6974 3' -44 NC_001875.2 + 85284 0.66 0.999998
Target:  5'- -cGAACACgguuugcGCGGGCGGcgcgggCGCGGg -3'
miRNA:   3'- gaUUUGUGaa-----CGUUUGUCaua---GCGCC- -5'
6974 3' -44 NC_001875.2 + 116001 0.66 0.999998
Target:  5'- ---cACGCUggucucGCGGuuGCAGUcUCGCGGc -3'
miRNA:   3'- gauuUGUGAa-----CGUU--UGUCAuAGCGCC- -5'
6974 3' -44 NC_001875.2 + 103840 0.66 0.999998
Target:  5'- uUGuACACUauuuUGUGAACGGUcUCGCGc -3'
miRNA:   3'- gAUuUGUGA----ACGUUUGUCAuAGCGCc -5'
6974 3' -44 NC_001875.2 + 145 0.66 0.999998
Target:  5'- --uGACAC-UGCAAgGCAGgcaCGCGGc -3'
miRNA:   3'- gauUUGUGaACGUU-UGUCauaGCGCC- -5'
6974 3' -44 NC_001875.2 + 117097 0.67 0.999997
Target:  5'- -gAAACGCgucGCAAacccaACAGgg-CGCGGa -3'
miRNA:   3'- gaUUUGUGaa-CGUU-----UGUCauaGCGCC- -5'
6974 3' -44 NC_001875.2 + 76953 0.67 0.999997
Target:  5'- -aAGACGCgccgUGCGAGCccaAGUG-CGCGa -3'
miRNA:   3'- gaUUUGUGa---ACGUUUG---UCAUaGCGCc -5'
6974 3' -44 NC_001875.2 + 92427 0.67 0.999995
Target:  5'- -cAGACAUUUGCAAAaAGcugGUCGCa- -3'
miRNA:   3'- gaUUUGUGAACGUUUgUCa--UAGCGcc -5'
6974 3' -44 NC_001875.2 + 47547 0.67 0.999993
Target:  5'- aCUAGGCGCgcaucugGCAGagcucGCAGUAUCGgauaaaGGa -3'
miRNA:   3'- -GAUUUGUGaa-----CGUU-----UGUCAUAGCg-----CC- -5'
6974 3' -44 NC_001875.2 + 79637 0.67 0.999993
Target:  5'- uUAAACGguuUUUGUcgaagcaaauaAAGCuGUAUCGCGGg -3'
miRNA:   3'- gAUUUGU---GAACG-----------UUUGuCAUAGCGCC- -5'
6974 3' -44 NC_001875.2 + 2949 0.67 0.99999
Target:  5'- gCUGGcGCGCUUGCucggcAGCGGUGUCGaCa- -3'
miRNA:   3'- -GAUU-UGUGAACGu----UUGUCAUAGC-Gcc -5'
6974 3' -44 NC_001875.2 + 71545 0.67 0.99999
Target:  5'- --cGACGCgucGCcuGCAGUGUCGCc- -3'
miRNA:   3'- gauUUGUGaa-CGuuUGUCAUAGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.