Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6974 | 5' | -55.8 | NC_001875.2 | + | 65772 | 0.66 | 0.886587 |
Target: 5'- gCGCgGCGGgcGGCgGCGCGUcGUCGUUg -3' miRNA: 3'- -GCGgCGUU--UUGaCGCGCGaCGGCAAg -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 92176 | 0.66 | 0.886587 |
Target: 5'- uCGCCGCc-----GCGCGCcGCCGg-- -3' miRNA: 3'- -GCGGCGuuuugaCGCGCGaCGGCaag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 7490 | 0.66 | 0.886587 |
Target: 5'- uGCCGCucauuuGGCUGaucgGCGCcgUGCUGUUUu -3' miRNA: 3'- gCGGCGuu----UUGACg---CGCG--ACGGCAAG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 83307 | 0.66 | 0.886587 |
Target: 5'- aGCCGuUAAAuacccGCgggGCGCGC-GCCGggCg -3' miRNA: 3'- gCGGC-GUUU-----UGa--CGCGCGaCGGCaaG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 781 | 0.66 | 0.886587 |
Target: 5'- uCGgCGCuAAAGCUGUGCGCgGCaauuGUUUu -3' miRNA: 3'- -GCgGCG-UUUUGACGCGCGaCGg---CAAG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 75032 | 0.66 | 0.886587 |
Target: 5'- gGCCGUGAacGAgUaCGCGCUGUCGUc- -3' miRNA: 3'- gCGGCGUU--UUgAcGCGCGACGGCAag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 91778 | 0.66 | 0.886587 |
Target: 5'- uCGUCGUAGuGCgGCGUGUUGUCGagCa -3' miRNA: 3'- -GCGGCGUUuUGaCGCGCGACGGCaaG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 129168 | 0.66 | 0.886587 |
Target: 5'- gCGCCGCAG--UUGCcccagGCGCcGCCGg-- -3' miRNA: 3'- -GCGGCGUUuuGACG-----CGCGaCGGCaag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 33954 | 0.66 | 0.886587 |
Target: 5'- aCGcCCGCAAcgugcccguGCgGCGCGCaGCCGa-- -3' miRNA: 3'- -GC-GGCGUUu--------UGaCGCGCGaCGGCaag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 66937 | 0.66 | 0.885886 |
Target: 5'- uCGUCGCu---CUGCGCGC-GCUugauuauGUUCg -3' miRNA: 3'- -GCGGCGuuuuGACGCGCGaCGG-------CAAG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 15833 | 0.66 | 0.885886 |
Target: 5'- uGCCGCGAGACUGCaaccgcgagaccaGCGUggUGCUc--- -3' miRNA: 3'- gCGGCGUUUUGACG-------------CGCG--ACGGcaag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 95277 | 0.66 | 0.885183 |
Target: 5'- uCGCCGCGugcgucgguauGCacacggggacggUGCGCGCcagcGCCGUUUg -3' miRNA: 3'- -GCGGCGUuu---------UG------------ACGCGCGa---CGGCAAG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 71966 | 0.66 | 0.884477 |
Target: 5'- uCGCCGCGAAGCUcGUccaucagcuugcacGCGUcGCUGUagUCg -3' miRNA: 3'- -GCGGCGUUUUGA-CG--------------CGCGaCGGCA--AG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 59213 | 0.66 | 0.879472 |
Target: 5'- gCGCCGUuuGGCgUGC-CGCagGCCGUa- -3' miRNA: 3'- -GCGGCGuuUUG-ACGcGCGa-CGGCAag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 59635 | 0.66 | 0.879472 |
Target: 5'- aCGCCGCGucGCUgGCuCGUggGCUGUUUg -3' miRNA: 3'- -GCGGCGUuuUGA-CGcGCGa-CGGCAAG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 48631 | 0.66 | 0.879472 |
Target: 5'- uGCCGCu--GCUGCGCagccagucGCUGgUGUg- -3' miRNA: 3'- gCGGCGuuuUGACGCG--------CGACgGCAag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 68774 | 0.66 | 0.879472 |
Target: 5'- gGuuGCGGAAC--CGCGCagGUCGUUCu -3' miRNA: 3'- gCggCGUUUUGacGCGCGa-CGGCAAG- -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 73702 | 0.66 | 0.879472 |
Target: 5'- uGCUGCGGcGGCUGCG-GCUGuuGg-- -3' miRNA: 3'- gCGGCGUU-UUGACGCgCGACggCaag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 66791 | 0.66 | 0.879472 |
Target: 5'- cCGCCGUuguAAAACuuuUGCGCGUacGCCGg-- -3' miRNA: 3'- -GCGGCG---UUUUG---ACGCGCGa-CGGCaag -5' |
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6974 | 5' | -55.8 | NC_001875.2 | + | 81291 | 0.66 | 0.879472 |
Target: 5'- -cCCGCAAaaGACacGCGCGCcGCCGg-- -3' miRNA: 3'- gcGGCGUU--UUGa-CGCGCGaCGGCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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