miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6974 5' -55.8 NC_001875.2 + 66791 0.66 0.879472
Target:  5'- cCGCCGUuguAAAACuuuUGCGCGUacGCCGg-- -3'
miRNA:   3'- -GCGGCG---UUUUG---ACGCGCGa-CGGCaag -5'
6974 5' -55.8 NC_001875.2 + 88236 0.66 0.879472
Target:  5'- aCGgCGCAAGcgGC-GCGCGCcGCCGc-- -3'
miRNA:   3'- -GCgGCGUUU--UGaCGCGCGaCGGCaag -5'
6974 5' -55.8 NC_001875.2 + 781 0.66 0.886587
Target:  5'- uCGgCGCuAAAGCUGUGCGCgGCaauuGUUUu -3'
miRNA:   3'- -GCgGCG-UUUUGACGCGCGaCGg---CAAG- -5'
6974 5' -55.8 NC_001875.2 + 95277 0.66 0.885183
Target:  5'- uCGCCGCGugcgucgguauGCacacggggacggUGCGCGCcagcGCCGUUUg -3'
miRNA:   3'- -GCGGCGUuu---------UG------------ACGCGCGa---CGGCAAG- -5'
6974 5' -55.8 NC_001875.2 + 75032 0.66 0.886587
Target:  5'- gGCCGUGAacGAgUaCGCGCUGUCGUc- -3'
miRNA:   3'- gCGGCGUU--UUgAcGCGCGACGGCAag -5'
6974 5' -55.8 NC_001875.2 + 81291 0.66 0.879472
Target:  5'- -cCCGCAAaaGACacGCGCGCcGCCGg-- -3'
miRNA:   3'- gcGGCGUU--UUGa-CGCGCGaCGGCaag -5'
6974 5' -55.8 NC_001875.2 + 30980 0.66 0.863793
Target:  5'- gCGCCucgcgcucaaaaaGCAAGAUUacGCGCGCgcgGCCGa-- -3'
miRNA:   3'- -GCGG-------------CGUUUUGA--CGCGCGa--CGGCaag -5'
6974 5' -55.8 NC_001875.2 + 18515 0.66 0.854401
Target:  5'- cCGCCGCAcgaaaagcccaccauGCUGguguaCGUGCUGCUGggCg -3'
miRNA:   3'- -GCGGCGUuu-------------UGAC-----GCGCGACGGCaaG- -5'
6974 5' -55.8 NC_001875.2 + 121560 0.66 0.879472
Target:  5'- -uUUGCAAAcuuaacguaGCUcGCGCGCUGCuCGUUUu -3'
miRNA:   3'- gcGGCGUUU---------UGA-CGCGCGACG-GCAAG- -5'
6974 5' -55.8 NC_001875.2 + 59393 0.66 0.877293
Target:  5'- uGCCGCGgucaacaugcaauuGAACgaagccagGCGCGCcguUGCCGa-- -3'
miRNA:   3'- gCGGCGU--------------UUUGa-------CGCGCG---ACGGCaag -5'
6974 5' -55.8 NC_001875.2 + 92506 0.66 0.872129
Target:  5'- gGgCGCAAAACgggcgcucgUGCGCGCccgGCgCGUUUu -3'
miRNA:   3'- gCgGCGUUUUG---------ACGCGCGa--CG-GCAAG- -5'
6974 5' -55.8 NC_001875.2 + 71966 0.66 0.884477
Target:  5'- uCGCCGCGAAGCUcGUccaucagcuugcacGCGUcGCUGUagUCg -3'
miRNA:   3'- -GCGGCGUUUUGA-CG--------------CGCGaCGGCA--AG- -5'
6974 5' -55.8 NC_001875.2 + 31916 0.66 0.856778
Target:  5'- gGCCGCGcuGCaccGCGCGCggGcCCGcUCg -3'
miRNA:   3'- gCGGCGUuuUGa--CGCGCGa-C-GGCaAG- -5'
6974 5' -55.8 NC_001875.2 + 92176 0.66 0.886587
Target:  5'- uCGCCGCc-----GCGCGCcGCCGg-- -3'
miRNA:   3'- -GCGGCGuuuugaCGCGCGaCGGCaag -5'
6974 5' -55.8 NC_001875.2 + 65772 0.66 0.886587
Target:  5'- gCGCgGCGGgcGGCgGCGCGUcGUCGUUg -3'
miRNA:   3'- -GCGgCGUU--UUGaCGCGCGaCGGCAAg -5'
6974 5' -55.8 NC_001875.2 + 15833 0.66 0.885886
Target:  5'- uGCCGCGAGACUGCaaccgcgagaccaGCGUggUGCUc--- -3'
miRNA:   3'- gCGGCGUUUUGACG-------------CGCG--ACGGcaag -5'
6974 5' -55.8 NC_001875.2 + 42752 0.66 0.871382
Target:  5'- gCGCaUGguGAGCgGCGCGCUcgggucgGCCGUg- -3'
miRNA:   3'- -GCG-GCguUUUGaCGCGCGA-------CGGCAag -5'
6974 5' -55.8 NC_001875.2 + 130094 0.66 0.864562
Target:  5'- uCGCCGCuGAGGCaccGCuaGCacacGCCGUUCg -3'
miRNA:   3'- -GCGGCG-UUUUGa--CGcgCGa---CGGCAAG- -5'
6974 5' -55.8 NC_001875.2 + 66937 0.66 0.885886
Target:  5'- uCGUCGCu---CUGCGCGC-GCUugauuauGUUCg -3'
miRNA:   3'- -GCGGCGuuuuGACGCGCGaCGG-------CAAG- -5'
6974 5' -55.8 NC_001875.2 + 129168 0.66 0.886587
Target:  5'- gCGCCGCAG--UUGCcccagGCGCcGCCGg-- -3'
miRNA:   3'- -GCGGCGUUuuGACG-----CGCGaCGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.