miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6975 5' -61.1 NC_001875.2 + 67813 0.66 0.69864
Target:  5'- uGUACCCGGAcgaGCGGUuuucggccaAGUGGCGcGGc -3'
miRNA:   3'- cCAUGGGCCU---CGCCGc--------UCACCGC-CUc -5'
6975 5' -61.1 NC_001875.2 + 18189 0.66 0.69864
Target:  5'- cGGUGCCgGcGGGCGuaGGcGUGGUGGu- -3'
miRNA:   3'- -CCAUGGgC-CUCGCcgCU-CACCGCCuc -5'
6975 5' -61.1 NC_001875.2 + 65763 0.66 0.688903
Target:  5'- cGUAUUCGuGcGCGGCGGGcGGCGGc- -3'
miRNA:   3'- cCAUGGGC-CuCGCCGCUCaCCGCCuc -5'
6975 5' -61.1 NC_001875.2 + 118100 0.66 0.688903
Target:  5'- uGUGCgCGacGcCGcGCGAGUGGUGGAGa -3'
miRNA:   3'- cCAUGgGCcuC-GC-CGCUCACCGCCUC- -5'
6975 5' -61.1 NC_001875.2 + 50138 0.67 0.619948
Target:  5'- --cGCUCGGuGCGcGCGGGUGuGCuGAGg -3'
miRNA:   3'- ccaUGGGCCuCGC-CGCUCAC-CGcCUC- -5'
6975 5' -61.1 NC_001875.2 + 109093 0.67 0.610073
Target:  5'- cGGUGaugugCUGGAGCGGUGcGUGGcCGGc- -3'
miRNA:   3'- -CCAUg----GGCCUCGCCGCuCACC-GCCuc -5'
6975 5' -61.1 NC_001875.2 + 83809 0.68 0.58057
Target:  5'- cGUGCCUGuGGGCGGCGGccacGUGGCc--- -3'
miRNA:   3'- cCAUGGGC-CUCGCCGCU----CACCGccuc -5'
6975 5' -61.1 NC_001875.2 + 84370 0.69 0.485281
Target:  5'- aGGUGCgcggccugCCGGGGCGGCGucGGUaGcCGGAGc -3'
miRNA:   3'- -CCAUG--------GGCCUCGCCGC--UCAcC-GCCUC- -5'
6975 5' -61.1 NC_001875.2 + 86692 0.69 0.485281
Target:  5'- cGUACCUGGccaguAGCGGCaAGUGGCGc-- -3'
miRNA:   3'- cCAUGGGCC-----UCGCCGcUCACCGCcuc -5'
6975 5' -61.1 NC_001875.2 + 116867 0.7 0.44924
Target:  5'- uGUG-CUGGAGCGGCGuuGUGGUgcaGGAGu -3'
miRNA:   3'- cCAUgGGCCUCGCCGCu-CACCG---CCUC- -5'
6975 5' -61.1 NC_001875.2 + 33583 0.7 0.431781
Target:  5'- -aUGCCC-GAGuCGGCGAcGUGGCGGu- -3'
miRNA:   3'- ccAUGGGcCUC-GCCGCU-CACCGCCuc -5'
6975 5' -61.1 NC_001875.2 + 117225 0.71 0.381889
Target:  5'- cGUACUCGG-GCGGCacaaaacUGGCGGAGa -3'
miRNA:   3'- cCAUGGGCCuCGCCGcuc----ACCGCCUC- -5'
6975 5' -61.1 NC_001875.2 + 84427 0.71 0.380293
Target:  5'- aGGUGCCaucggcggaucgGGAGCGGCG-GcGGCGGuAGa -3'
miRNA:   3'- -CCAUGGg-----------CCUCGCCGCuCaCCGCC-UC- -5'
6975 5' -61.1 NC_001875.2 + 82034 0.72 0.335989
Target:  5'- gGGUACgUGGAcaucGCGGCGGGcUGaGCGGAa -3'
miRNA:   3'- -CCAUGgGCCU----CGCCGCUC-AC-CGCCUc -5'
6975 5' -61.1 NC_001875.2 + 124716 0.73 0.307696
Target:  5'- --cGCCUGGcaAGCGGCGcGUGGCGGu- -3'
miRNA:   3'- ccaUGGGCC--UCGCCGCuCACCGCCuc -5'
6975 5' -61.1 NC_001875.2 + 84330 1.09 0.000918
Target:  5'- cGGUACCCGGAGCGGCGAGUGGCGGAGc -3'
miRNA:   3'- -CCAUGGGCCUCGCCGCUCACCGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.