miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6976 5' -55.2 NC_001875.2 + 57584 0.66 0.894709
Target:  5'- cGGCGucGCGCuguCCagaagcgUGGUGUAGgGCAGg -3'
miRNA:   3'- -UCGU--CGUGuu-GGa------ACCGCAUCgCGUC- -5'
6976 5' -55.2 NC_001875.2 + 75623 0.66 0.894709
Target:  5'- cGGCguuGGCGuCGGCgUUGGCGUcGGCGuCGGc -3'
miRNA:   3'- -UCG---UCGU-GUUGgAACCGCA-UCGC-GUC- -5'
6976 5' -55.2 NC_001875.2 + 88946 0.66 0.887785
Target:  5'- cGGCuGCACAGCCUcgacguUGaacGCGUuGCGCuGg -3'
miRNA:   3'- -UCGuCGUGUUGGA------AC---CGCAuCGCGuC- -5'
6976 5' -55.2 NC_001875.2 + 39821 0.66 0.887785
Target:  5'- cGGCGGC-CGACUUUGGCacGGUGUg- -3'
miRNA:   3'- -UCGUCGuGUUGGAACCGcaUCGCGuc -5'
6976 5' -55.2 NC_001875.2 + 12765 0.66 0.887785
Target:  5'- uGGCGGUuguugucCAGCCggGGCGccGCGCAc -3'
miRNA:   3'- -UCGUCGu------GUUGGaaCCGCauCGCGUc -5'
6976 5' -55.2 NC_001875.2 + 33381 0.66 0.887785
Target:  5'- cAGCAGCggguACAGCaUUGcGCGgUAGCGCu- -3'
miRNA:   3'- -UCGUCG----UGUUGgAAC-CGC-AUCGCGuc -5'
6976 5' -55.2 NC_001875.2 + 48803 0.66 0.887785
Target:  5'- cGGCAGcCGCGAUCacgUGGCGcacucgcugcGCGCGGu -3'
miRNA:   3'- -UCGUC-GUGUUGGa--ACCGCau--------CGCGUC- -5'
6976 5' -55.2 NC_001875.2 + 58223 0.66 0.887079
Target:  5'- cGCAGCcgccGCAGCCgccgccgcaacagUUGGCGcucGUGCAGc -3'
miRNA:   3'- uCGUCG----UGUUGG-------------AACCGCau-CGCGUC- -5'
6976 5' -55.2 NC_001875.2 + 13704 0.66 0.883515
Target:  5'- aGGCuuugaaaaacuuuGCGCccGCCUUGGCGgcaaugcgguuGCGCAGg -3'
miRNA:   3'- -UCGu------------CGUGu-UGGAACCGCau---------CGCGUC- -5'
6976 5' -55.2 NC_001875.2 + 87375 0.66 0.880621
Target:  5'- cGguGCACGA-CUUGGCGcacuGCGCc- -3'
miRNA:   3'- uCguCGUGUUgGAACCGCau--CGCGuc -5'
6976 5' -55.2 NC_001875.2 + 74956 0.66 0.880621
Target:  5'- cGGCGGUACGACCUgccGGC-UA-UGCAGc -3'
miRNA:   3'- -UCGUCGUGUUGGAa--CCGcAUcGCGUC- -5'
6976 5' -55.2 NC_001875.2 + 5913 0.66 0.880621
Target:  5'- cAGCgccGGCAUGGCgUUGG-GUAGCGCc- -3'
miRNA:   3'- -UCG---UCGUGUUGgAACCgCAUCGCGuc -5'
6976 5' -55.2 NC_001875.2 + 95431 0.66 0.880621
Target:  5'- cGCGGCGcCGGCCa--GCGU-GCGCGGc -3'
miRNA:   3'- uCGUCGU-GUUGGaacCGCAuCGCGUC- -5'
6976 5' -55.2 NC_001875.2 + 90991 0.66 0.880621
Target:  5'- cGCGGUGCgcgUCUUGGCG-AGCGCc- -3'
miRNA:   3'- uCGUCGUGuu-GGAACCGCaUCGCGuc -5'
6976 5' -55.2 NC_001875.2 + 12095 0.66 0.880621
Target:  5'- cGGCGGCG-AGCUUUGGCGguacaccaGCAGg -3'
miRNA:   3'- -UCGUCGUgUUGGAACCGCaucg----CGUC- -5'
6976 5' -55.2 NC_001875.2 + 124768 0.66 0.880621
Target:  5'- uGC-GCACAgGCCggUGGCGUcGcCGCAGc -3'
miRNA:   3'- uCGuCGUGU-UGGa-ACCGCAuC-GCGUC- -5'
6976 5' -55.2 NC_001875.2 + 42323 0.66 0.880621
Target:  5'- gAGCGcGCccaGCGGCCccaGGCGgaAGCGCAGu -3'
miRNA:   3'- -UCGU-CG---UGUUGGaa-CCGCa-UCGCGUC- -5'
6976 5' -55.2 NC_001875.2 + 34970 0.66 0.880621
Target:  5'- gGGCAGCugGACCgcccGCuagaaGUGGCGCc- -3'
miRNA:   3'- -UCGUCGugUUGGaac-CG-----CAUCGCGuc -5'
6976 5' -55.2 NC_001875.2 + 37600 0.66 0.880621
Target:  5'- cGCGGC-CGGCCgcacGGCGgcGUGCu- -3'
miRNA:   3'- uCGUCGuGUUGGaa--CCGCauCGCGuc -5'
6976 5' -55.2 NC_001875.2 + 127383 0.66 0.873222
Target:  5'- cGGaCGGCGCucagAGCCUggccaaagugcUGGCGgcGCGCGu -3'
miRNA:   3'- -UC-GUCGUG----UUGGA-----------ACCGCauCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.