miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 67265 0.66 0.943508
Target:  5'- gGUgGCGCGCUUgaUGAACcacgagUCGC-CGGCc -3'
miRNA:   3'- gCAgCGCGUGGA--ACUUG------AGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 68572 0.7 0.757835
Target:  5'- gGUCGCGCACCgcgUGGcGC-CGCUggccgccgagccCGACg -3'
miRNA:   3'- gCAGCGCGUGGa--ACU-UGaGCGA------------GCUG- -5'
6977 3' -54.5 NC_001875.2 + 68717 0.66 0.930758
Target:  5'- gGcCGCGCGCCcggccgcuaucccaUGGACgagcggUUGCUCGACa -3'
miRNA:   3'- gCaGCGCGUGGa-------------ACUUG------AGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 69233 0.68 0.855571
Target:  5'- gCGaCGCGCGCUgUGccGACUUGCcCGACg -3'
miRNA:   3'- -GCaGCGCGUGGaAC--UUGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 71924 0.71 0.728258
Target:  5'- gCGUCGgcgaGCGCCUUGAccGCgCGCUCcGCg -3'
miRNA:   3'- -GCAGCg---CGUGGAACU--UGaGCGAGcUG- -5'
6977 3' -54.5 NC_001875.2 + 74114 0.67 0.885416
Target:  5'- gCGcCGCGCgACUUUGcgGugUCGCgCGACg -3'
miRNA:   3'- -GCaGCGCG-UGGAAC--UugAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 79805 0.66 0.943508
Target:  5'- uCGUCGgGC-CgCUUGAACgUGCcCGGCa -3'
miRNA:   3'- -GCAGCgCGuG-GAACUUGaGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 80612 0.71 0.727258
Target:  5'- uCGUCacgguggGCGCGCg--GAACgcgCGCUCGACg -3'
miRNA:   3'- -GCAG-------CGCGUGgaaCUUGa--GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 80795 0.68 0.878288
Target:  5'- uG-CGCGCugCUcgacuUGGACUuuaaacacgUGCUCGACu -3'
miRNA:   3'- gCaGCGCGugGA-----ACUUGA---------GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 83593 0.68 0.878288
Target:  5'- aCGcCGCGCGCCUUauucACggUGUUCGGCg -3'
miRNA:   3'- -GCaGCGCGUGGAAcu--UGa-GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 85151 1.11 0.002602
Target:  5'- aCGUCGCGCACCUUGAACUCGCUCGACg -3'
miRNA:   3'- -GCAGCGCGUGGAACUUGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 91123 0.68 0.839374
Target:  5'- gCGUCuGCGCGuCCUUGAcguacugcagGCUUGCgCGAUu -3'
miRNA:   3'- -GCAG-CGCGU-GGAACU----------UGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 91207 0.69 0.83098
Target:  5'- gCGU-GCGCGCCcagUUGAGCUUGUuguacaggcugUCGACu -3'
miRNA:   3'- -GCAgCGCGUGG---AACUUGAGCG-----------AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 95898 0.68 0.876106
Target:  5'- uGUCGUGCACCgaagcaaaaauacgcGGGCaUGCUCGAg -3'
miRNA:   3'- gCAGCGCGUGGaa-------------CUUGaGCGAGCUg -5'
6977 3' -54.5 NC_001875.2 + 96418 0.72 0.646316
Target:  5'- aGUCGCGCGCa---AACUCGCgcuugUCGGCg -3'
miRNA:   3'- gCAGCGCGUGgaacUUGAGCG-----AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 96942 0.68 0.847573
Target:  5'- ---gGCGCGCCUUGAuCUCGCgcUCGu- -3'
miRNA:   3'- gcagCGCGUGGAACUuGAGCG--AGCug -5'
6977 3' -54.5 NC_001875.2 + 99734 0.72 0.646316
Target:  5'- aGU-GCGCGCCUUGucguGCUCGUgcugUGACg -3'
miRNA:   3'- gCAgCGCGUGGAACu---UGAGCGa---GCUG- -5'
6977 3' -54.5 NC_001875.2 + 103078 0.66 0.939282
Target:  5'- --aCGCGCAuguuaaacuguccgcUCUUGGacacgucgaucgugGCUCGCUUGGCg -3'
miRNA:   3'- gcaGCGCGU---------------GGAACU--------------UGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 104377 0.68 0.839374
Target:  5'- gCGUCGCGCACCcc--ACUCcagCGACa -3'
miRNA:   3'- -GCAGCGCGUGGaacuUGAGcgaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 105775 0.67 0.905396
Target:  5'- --cCGCGCugCaaUGGACagCGUUCGACa -3'
miRNA:   3'- gcaGCGCGugGa-ACUUGa-GCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.