miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 69233 0.68 0.855571
Target:  5'- gCGaCGCGCGCUgUGccGACUUGCcCGACg -3'
miRNA:   3'- -GCaGCGCGUGGaAC--UUGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 68717 0.66 0.930758
Target:  5'- gGcCGCGCGCCcggccgcuaucccaUGGACgagcggUUGCUCGACa -3'
miRNA:   3'- gCaGCGCGUGGa-------------ACUUG------AGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 68572 0.7 0.757835
Target:  5'- gGUCGCGCACCgcgUGGcGC-CGCUggccgccgagccCGACg -3'
miRNA:   3'- gCAGCGCGUGGa--ACU-UGaGCGA------------GCUG- -5'
6977 3' -54.5 NC_001875.2 + 67265 0.66 0.943508
Target:  5'- gGUgGCGCGCUUgaUGAACcacgagUCGC-CGGCc -3'
miRNA:   3'- gCAgCGCGUGGA--ACUUG------AGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 67120 0.68 0.86336
Target:  5'- aCGUCGCcCGCCUUGgccagcgccGugUUGCUgCGGCu -3'
miRNA:   3'- -GCAGCGcGUGGAAC---------UugAGCGA-GCUG- -5'
6977 3' -54.5 NC_001875.2 + 62369 0.66 0.923205
Target:  5'- gGUCGCGCGCCagGGA---GgUCGACa -3'
miRNA:   3'- gCAGCGCGUGGaaCUUgagCgAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 59096 0.75 0.493561
Target:  5'- gCGUUggaGCGCACCUUGGGC-CGCUaCGAg -3'
miRNA:   3'- -GCAG---CGCGUGGAACUUGaGCGA-GCUg -5'
6977 3' -54.5 NC_001875.2 + 57720 0.67 0.911577
Target:  5'- uCGUCGCGCgacACCgcaAAgUCGCgCGGCg -3'
miRNA:   3'- -GCAGCGCG---UGGaacUUgAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 57703 0.66 0.923205
Target:  5'- gCGcCGCGC-CCUcGAACUCcaGCUCuaGGCg -3'
miRNA:   3'- -GCaGCGCGuGGAaCUUGAG--CGAG--CUG- -5'
6977 3' -54.5 NC_001875.2 + 56054 0.74 0.553367
Target:  5'- uGUCGCgGCACUuuUUGAGCUCGCUgCGuuGCu -3'
miRNA:   3'- gCAGCG-CGUGG--AACUUGAGCGA-GC--UG- -5'
6977 3' -54.5 NC_001875.2 + 54882 0.73 0.594422
Target:  5'- -uUCGCGCAC--UGGGCUCGCaCGGCg -3'
miRNA:   3'- gcAGCGCGUGgaACUUGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 54003 0.71 0.708096
Target:  5'- gGUCGCGCacgGCCUUGGcgGCgcgCGCguacCGGCa -3'
miRNA:   3'- gCAGCGCG---UGGAACU--UGa--GCGa---GCUG- -5'
6977 3' -54.5 NC_001875.2 + 50977 0.68 0.855571
Target:  5'- uGgCGCGCGCCgaGucGCUCaGCUUGACc -3'
miRNA:   3'- gCaGCGCGUGGaaCu-UGAG-CGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 50845 0.72 0.650469
Target:  5'- gCGUCGCGCGCCUuuuucagcagcagcuUuuGCUCGggCGGCg -3'
miRNA:   3'- -GCAGCGCGUGGA---------------AcuUGAGCgaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 48196 0.66 0.943508
Target:  5'- -aUUGCGCACUUUGGGCaaaUGCccCGACa -3'
miRNA:   3'- gcAGCGCGUGGAACUUGa--GCGa-GCUG- -5'
6977 3' -54.5 NC_001875.2 + 47550 0.68 0.855571
Target:  5'- aGgCGCGCAUCUggcaGAGCUCGCaguaUCGGa -3'
miRNA:   3'- gCaGCGCGUGGAa---CUUGAGCG----AGCUg -5'
6977 3' -54.5 NC_001875.2 + 47257 0.67 0.903495
Target:  5'- -cUCGUGCaccagcgggucacgACCgaGGACgCGCUCGACg -3'
miRNA:   3'- gcAGCGCG--------------UGGaaCUUGaGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 46591 0.66 0.9388
Target:  5'- uGUC-CGCGCCgagcgcgGAACccgCGCUCGuCg -3'
miRNA:   3'- gCAGcGCGUGGaa-----CUUGa--GCGAGCuG- -5'
6977 3' -54.5 NC_001875.2 + 44330 0.66 0.933848
Target:  5'- gGUCGCGUucGCUUUu-ACUCGCUUGuuGCg -3'
miRNA:   3'- gCAGCGCG--UGGAAcuUGAGCGAGC--UG- -5'
6977 3' -54.5 NC_001875.2 + 43789 0.66 0.9388
Target:  5'- aCGUaCGCGgGCgUUG-GCUgGCUUGGCu -3'
miRNA:   3'- -GCA-GCGCgUGgAACuUGAgCGAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.