miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 80795 0.68 0.878288
Target:  5'- uG-CGCGCugCUcgacuUGGACUuuaaacacgUGCUCGACu -3'
miRNA:   3'- gCaGCGCGugGA-----ACUUGA---------GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 74114 0.67 0.885416
Target:  5'- gCGcCGCGCgACUUUGcgGugUCGCgCGACg -3'
miRNA:   3'- -GCaGCGCG-UGGAAC--UugAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 2421 0.67 0.898974
Target:  5'- uGUCGCGCACCgu--GCUCauggugcuuaGCUCcACg -3'
miRNA:   3'- gCAGCGCGUGGaacuUGAG----------CGAGcUG- -5'
6977 3' -54.5 NC_001875.2 + 105775 0.67 0.905396
Target:  5'- --cCGCGCugCaaUGGACagCGUUCGACa -3'
miRNA:   3'- gcaGCGCGugGa-ACUUGa-GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 495 0.66 0.919819
Target:  5'- aCGUUGUGCGCCUguuuuuggcgcuccaUGGACUCuugcaaauCUCGAg -3'
miRNA:   3'- -GCAGCGCGUGGA---------------ACUUGAGc-------GAGCUg -5'
6977 3' -54.5 NC_001875.2 + 57703 0.66 0.923205
Target:  5'- gCGcCGCGC-CCUcGAACUCcaGCUCuaGGCg -3'
miRNA:   3'- -GCaGCGCGuGGAaCUUGAG--CGAG--CUG- -5'
6977 3' -54.5 NC_001875.2 + 44330 0.66 0.933848
Target:  5'- gGUCGCGUucGCUUUu-ACUCGCUUGuuGCg -3'
miRNA:   3'- gCAGCGCG--UGGAAcuUGAGCGAGC--UG- -5'
6977 3' -54.5 NC_001875.2 + 41003 0.66 0.933848
Target:  5'- aCGUCGCGCACCUaaAGCaggUCGCcaaccgcgUGGCc -3'
miRNA:   3'- -GCAGCGCGUGGAacUUG---AGCGa-------GCUG- -5'
6977 3' -54.5 NC_001875.2 + 46591 0.66 0.9388
Target:  5'- uGUC-CGCGCCgagcgcgGAACccgCGCUCGuCg -3'
miRNA:   3'- gCAGcGCGUGGaa-----CUUGa--GCGAGCuG- -5'
6977 3' -54.5 NC_001875.2 + 47550 0.68 0.855571
Target:  5'- aGgCGCGCAUCUggcaGAGCUCGCaguaUCGGa -3'
miRNA:   3'- gCaGCGCGUGGAa---CUUGAGCG----AGCUg -5'
6977 3' -54.5 NC_001875.2 + 96942 0.68 0.847573
Target:  5'- ---gGCGCGCCUUGAuCUCGCgcUCGu- -3'
miRNA:   3'- gcagCGCGUGGAACUuGAGCG--AGCug -5'
6977 3' -54.5 NC_001875.2 + 99734 0.72 0.646316
Target:  5'- aGU-GCGCGCCUUGucguGCUCGUgcugUGACg -3'
miRNA:   3'- gCAgCGCGUGGAACu---UGAGCGa---GCUG- -5'
6977 3' -54.5 NC_001875.2 + 96418 0.72 0.646316
Target:  5'- aGUCGCGCGCa---AACUCGCgcuugUCGGCg -3'
miRNA:   3'- gCAGCGCGUGgaacUUGAGCG-----AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 2943 0.72 0.656694
Target:  5'- --cCGCGCGCUggcGcGCUUGCUCGGCa -3'
miRNA:   3'- gcaGCGCGUGGaa-CuUGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 33856 0.72 0.677379
Target:  5'- aCGUCGCGCACCgUGcGCg-GC-CGGCa -3'
miRNA:   3'- -GCAGCGCGUGGaACuUGagCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 24006 0.69 0.795623
Target:  5'- gCGUCgcaagGCGCACCggGcGCggGCUCGGCg -3'
miRNA:   3'- -GCAG-----CGCGUGGaaCuUGagCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 120850 0.69 0.804712
Target:  5'- --aCGCGCGCCUgcAGCgcuucgUCGCUUGACu -3'
miRNA:   3'- gcaGCGCGUGGAacUUG------AGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 21898 0.69 0.8224
Target:  5'- aCGUCGCGCugCUccgcggUGAGCggCGCgugcaUGGCu -3'
miRNA:   3'- -GCAGCGCGugGA------ACUUGa-GCGa----GCUG- -5'
6977 3' -54.5 NC_001875.2 + 104377 0.68 0.839374
Target:  5'- gCGUCGCGCACCcc--ACUCcagCGACa -3'
miRNA:   3'- -GCAGCGCGUGGaacuUGAGcgaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 2295 0.68 0.839374
Target:  5'- gCG-CGCGCGCCgUGGccgcGCgcaGCUCGGCc -3'
miRNA:   3'- -GCaGCGCGUGGaACU----UGag-CGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.