miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 67265 0.66 0.943508
Target:  5'- gGUgGCGCGCUUgaUGAACcacgagUCGC-CGGCc -3'
miRNA:   3'- gCAgCGCGUGGA--ACUUG------AGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 44330 0.66 0.933848
Target:  5'- gGUCGCGUucGCUUUu-ACUCGCUUGuuGCg -3'
miRNA:   3'- gCAGCGCG--UGGAAcuUGAGCGAGC--UG- -5'
6977 3' -54.5 NC_001875.2 + 33856 0.72 0.677379
Target:  5'- aCGUCGCGCACCgUGcGCg-GC-CGGCa -3'
miRNA:   3'- -GCAGCGCGUGGaACuUGagCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 2943 0.72 0.656694
Target:  5'- --cCGCGCGCUggcGcGCUUGCUCGGCa -3'
miRNA:   3'- gcaGCGCGUGGaa-CuUGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 96418 0.72 0.646316
Target:  5'- aGUCGCGCGCa---AACUCGCgcuugUCGGCg -3'
miRNA:   3'- gCAGCGCGUGgaacUUGAGCG-----AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 80612 0.71 0.727258
Target:  5'- uCGUCacgguggGCGCGCg--GAACgcgCGCUCGACg -3'
miRNA:   3'- -GCAG-------CGCGUGgaaCUUGa--GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 54882 0.73 0.594422
Target:  5'- -uUCGCGCAC--UGGGCUCGCaCGGCg -3'
miRNA:   3'- gcAGCGCGUGgaACUUGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 6972 0.66 0.928649
Target:  5'- aCGgCGCGCugCUUGAcaGCgggcaucuUUGCuUCGACg -3'
miRNA:   3'- -GCaGCGCGugGAACU--UG--------AGCG-AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 62369 0.66 0.923205
Target:  5'- gGUCGCGCGCCagGGA---GgUCGACa -3'
miRNA:   3'- gCAGCGCGUGGaaCUUgagCgAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 111765 0.66 0.917513
Target:  5'- --aCGUGCGCCgacgacUGGugUCGCUggUGACg -3'
miRNA:   3'- gcaGCGCGUGGa-----ACUugAGCGA--GCUG- -5'
6977 3' -54.5 NC_001875.2 + 67120 0.68 0.86336
Target:  5'- aCGUCGCcCGCCUUGgccagcgccGugUUGCUgCGGCu -3'
miRNA:   3'- -GCAGCGcGUGGAAC---------UugAGCGA-GCUG- -5'
6977 3' -54.5 NC_001875.2 + 50977 0.68 0.855571
Target:  5'- uGgCGCGCGCCgaGucGCUCaGCUUGACc -3'
miRNA:   3'- gCaGCGCGUGGaaCu-UGAG-CGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 69233 0.68 0.855571
Target:  5'- gCGaCGCGCGCUgUGccGACUUGCcCGACg -3'
miRNA:   3'- -GCaGCGCGUGGaAC--UUGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 91123 0.68 0.839374
Target:  5'- gCGUCuGCGCGuCCUUGAcguacugcagGCUUGCgCGAUu -3'
miRNA:   3'- -GCAG-CGCGU-GGAACU----------UGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 54003 0.71 0.708096
Target:  5'- gGUCGCGCacgGCCUUGGcgGCgcgCGCguacCGGCa -3'
miRNA:   3'- gCAGCGCG---UGGAACU--UGa--GCGa---GCUG- -5'
6977 3' -54.5 NC_001875.2 + 47257 0.67 0.903495
Target:  5'- -cUCGUGCaccagcgggucacgACCgaGGACgCGCUCGACg -3'
miRNA:   3'- gcAGCGCG--------------UGGaaCUUGaGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 5076 0.67 0.904765
Target:  5'- uCGUCGCGCacgucgaccACCUaaugGGGCUgCGCgcgcuaaUCGACg -3'
miRNA:   3'- -GCAGCGCG---------UGGAa---CUUGA-GCG-------AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 36660 0.67 0.905396
Target:  5'- gCGUCGUGCGCgcUGAGCUCGg--GGCg -3'
miRNA:   3'- -GCAGCGCGUGgaACUUGAGCgagCUG- -5'
6977 3' -54.5 NC_001875.2 + 16293 0.67 0.911577
Target:  5'- aCGUCcauGUGCGCCagcauugUGGACggGUUCGACa -3'
miRNA:   3'- -GCAG---CGCGUGGa------ACUUGagCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 57720 0.67 0.911577
Target:  5'- uCGUCGCGCgacACCgcaAAgUCGCgCGGCg -3'
miRNA:   3'- -GCAGCGCG---UGGaacUUgAGCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.