miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 57720 0.67 0.911577
Target:  5'- uCGUCGCGCgacACCgcaAAgUCGCgCGGCg -3'
miRNA:   3'- -GCAGCGCG---UGGaacUUgAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 16293 0.67 0.911577
Target:  5'- aCGUCcauGUGCGCCagcauugUGGACggGUUCGACa -3'
miRNA:   3'- -GCAG---CGCGUGGa------ACUUGagCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 105775 0.67 0.905396
Target:  5'- --cCGCGCugCaaUGGACagCGUUCGACa -3'
miRNA:   3'- gcaGCGCGugGa-ACUUGa-GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 36660 0.67 0.905396
Target:  5'- gCGUCGUGCGCgcUGAGCUCGg--GGCg -3'
miRNA:   3'- -GCAGCGCGUGgaACUUGAGCgagCUG- -5'
6977 3' -54.5 NC_001875.2 + 5076 0.67 0.904765
Target:  5'- uCGUCGCGCacgucgaccACCUaaugGGGCUgCGCgcgcuaaUCGACg -3'
miRNA:   3'- -GCAGCGCG---------UGGAa---CUUGA-GCG-------AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 47257 0.67 0.903495
Target:  5'- -cUCGUGCaccagcgggucacgACCgaGGACgCGCUCGACg -3'
miRNA:   3'- gcAGCGCG--------------UGGaaCUUGaGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 43342 0.67 0.898974
Target:  5'- cCGcCGCGCACCacguacUUGcGCuccagUCGCUCGAa -3'
miRNA:   3'- -GCaGCGCGUGG------AACuUG-----AGCGAGCUg -5'
6977 3' -54.5 NC_001875.2 + 2421 0.67 0.898974
Target:  5'- uGUCGCGCACCgu--GCUCauggugcuuaGCUCcACg -3'
miRNA:   3'- gCAGCGCGUGGaacuUGAG----------CGAGcUG- -5'
6977 3' -54.5 NC_001875.2 + 11080 0.67 0.892312
Target:  5'- gCGUggCGCGCGCCcUGGACacggccgcCGuCUCGGCg -3'
miRNA:   3'- -GCA--GCGCGUGGaACUUGa-------GC-GAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 38459 0.67 0.892312
Target:  5'- cCGgCGCGCGCUagaaUUGGugcaGCgcgUGCUCGACa -3'
miRNA:   3'- -GCaGCGCGUGG----AACU----UGa--GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 74114 0.67 0.885416
Target:  5'- gCGcCGCGCgACUUUGcgGugUCGCgCGACg -3'
miRNA:   3'- -GCaGCGCG-UGGAAC--UugAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 80795 0.68 0.878288
Target:  5'- uG-CGCGCugCUcgacuUGGACUuuaaacacgUGCUCGACu -3'
miRNA:   3'- gCaGCGCGugGA-----ACUUGA---------GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 448 0.68 0.878288
Target:  5'- cCGUCGUGCACCggcgagUGuucgCGCUUGcACa -3'
miRNA:   3'- -GCAGCGCGUGGa-----ACuugaGCGAGC-UG- -5'
6977 3' -54.5 NC_001875.2 + 83593 0.68 0.878288
Target:  5'- aCGcCGCGCGCCUUauucACggUGUUCGGCg -3'
miRNA:   3'- -GCaGCGCGUGGAAcu--UGa-GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 95898 0.68 0.876106
Target:  5'- uGUCGUGCACCgaagcaaaaauacgcGGGCaUGCUCGAg -3'
miRNA:   3'- gCAGCGCGUGGaa-------------CUUGaGCGAGCUg -5'
6977 3' -54.5 NC_001875.2 + 30463 0.68 0.86336
Target:  5'- gCGUUGCGCGCgUUUGcAACUUGUaaaagaacUCGGCg -3'
miRNA:   3'- -GCAGCGCGUG-GAAC-UUGAGCG--------AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 67120 0.68 0.86336
Target:  5'- aCGUCGCcCGCCUUGgccagcgccGugUUGCUgCGGCu -3'
miRNA:   3'- -GCAGCGcGUGGAAC---------UugAGCGA-GCUG- -5'
6977 3' -54.5 NC_001875.2 + 110424 0.68 0.855571
Target:  5'- aGUCGCGUugCUgcacgaugcgGAACUC-CUCGuCg -3'
miRNA:   3'- gCAGCGCGugGAa---------CUUGAGcGAGCuG- -5'
6977 3' -54.5 NC_001875.2 + 69233 0.68 0.855571
Target:  5'- gCGaCGCGCGCUgUGccGACUUGCcCGACg -3'
miRNA:   3'- -GCaGCGCGUGGaAC--UUGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 50977 0.68 0.855571
Target:  5'- uGgCGCGCGCCgaGucGCUCaGCUUGACc -3'
miRNA:   3'- gCaGCGCGUGGaaCu-UGAG-CGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.