miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6978 3' -46.8 NC_001875.2 + 7134 0.66 0.999763
Target:  5'- cGCCGCUu--GCCAggcgcguuggccGAAGGGCCAa--- -3'
miRNA:   3'- -CGGUGGcauUGGU------------UUUUCCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 94244 0.66 0.999695
Target:  5'- cGCCGCCGUGcgGCC-----GGCCGc--- -3'
miRNA:   3'- -CGGUGGCAU--UGGuuuuuCCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 59425 0.66 0.999612
Target:  5'- gGCgCGCCGUuGCCGAAAAaaauGGUCAg--- -3'
miRNA:   3'- -CG-GUGGCAuUGGUUUUU----CCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 109114 0.66 0.999612
Target:  5'- cGUgGCCGgcGCaCAAGuAGGCCAc--- -3'
miRNA:   3'- -CGgUGGCauUG-GUUUuUCCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 28725 0.66 0.999612
Target:  5'- cGCCGCCGccGCCAAGcgaGCCAc--- -3'
miRNA:   3'- -CGGUGGCauUGGUUUuucCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 52730 0.66 0.999509
Target:  5'- cGCCGCCGacaacGCCGu---GGCCAa--- -3'
miRNA:   3'- -CGGUGGCau---UGGUuuuuCCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 54662 0.66 0.999509
Target:  5'- -aCGCCGUcGCCGuuGucGGGCCAgUAAa -3'
miRNA:   3'- cgGUGGCAuUGGUuuU--UCCGGUaAUU- -5'
6978 3' -46.8 NC_001875.2 + 81826 0.66 0.999383
Target:  5'- -aCACCGUGGCCAAuucacGGGCgCGa--- -3'
miRNA:   3'- cgGUGGCAUUGGUUuu---UCCG-GUaauu -5'
6978 3' -46.8 NC_001875.2 + 12285 0.66 0.999383
Target:  5'- gGCCACCGUGugCAGcc-GGCa----- -3'
miRNA:   3'- -CGGUGGCAUugGUUuuuCCGguaauu -5'
6978 3' -46.8 NC_001875.2 + 10566 0.67 0.99923
Target:  5'- aGCCAaaGUAGCCGcgGGGGCa----- -3'
miRNA:   3'- -CGGUggCAUUGGUuuUUCCGguaauu -5'
6978 3' -46.8 NC_001875.2 + 120022 0.67 0.99923
Target:  5'- cGCCACCGgcgcGACCAcAAAcaccgacgcGGCCGg--- -3'
miRNA:   3'- -CGGUGGCa---UUGGUuUUU---------CCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 127394 0.67 0.999045
Target:  5'- uGCaCACCGUcACCGAuuuGGCCu---- -3'
miRNA:   3'- -CG-GUGGCAuUGGUUuuuCCGGuaauu -5'
6978 3' -46.8 NC_001875.2 + 2298 0.67 0.998961
Target:  5'- cGCgCGCCGUGGCCGcgcgcagcucGGCCAg--- -3'
miRNA:   3'- -CG-GUGGCAUUGGUuuuu------CCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 113765 0.67 0.998824
Target:  5'- aGCCGCCGUAAU----GAGGUCGc--- -3'
miRNA:   3'- -CGGUGGCAUUGguuuUUCCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 122907 0.67 0.998249
Target:  5'- cGCCAgCGcua-CAAAAAGGCCAc--- -3'
miRNA:   3'- -CGGUgGCauugGUUUUUCCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 55672 0.67 0.998249
Target:  5'- cGCCAUuuUGUAACCGuugguGAacAGGCCGUUu- -3'
miRNA:   3'- -CGGUG--GCAUUGGUu----UU--UCCGGUAAuu -5'
6978 3' -46.8 NC_001875.2 + 30197 0.68 0.997882
Target:  5'- uGgCGCCGUucGCCGcGAcGGCCGUUGu -3'
miRNA:   3'- -CgGUGGCAu-UGGUuUUuCCGGUAAUu -5'
6978 3' -46.8 NC_001875.2 + 127431 0.68 0.997453
Target:  5'- uGCCGCCGUgcauGAgCAAGAcgauGGCCGauUUGAg -3'
miRNA:   3'- -CGGUGGCA----UUgGUUUUu---CCGGU--AAUU- -5'
6978 3' -46.8 NC_001875.2 + 97881 0.68 0.997406
Target:  5'- uCCACCGUGcacguuguagacGCCGAAAcgcggcgcaagcuGGGCCAc--- -3'
miRNA:   3'- cGGUGGCAU------------UGGUUUU-------------UCCGGUaauu -5'
6978 3' -46.8 NC_001875.2 + 95989 0.68 0.996954
Target:  5'- aGCgCGCCGUGcaguACCcugcAAAAGGCCAc--- -3'
miRNA:   3'- -CG-GUGGCAU----UGGu---UUUUCCGGUaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.