miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6978 5' -55.2 NC_001875.2 + 49770 0.66 0.92833
Target:  5'- cGUCCuCGUCguCGUCGGugcuguacugcGCGCCGc- -3'
miRNA:   3'- aCAGGuGUAGguGCAGCC-----------UGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 7712 0.66 0.92833
Target:  5'- uUGUgCUGCGUgaaCGCGUCGGACAUUGa- -3'
miRNA:   3'- -ACA-GGUGUAg--GUGCAGCCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 90653 0.66 0.92833
Target:  5'- ---gCugGUCCcCGUCGGugGgCGUGg -3'
miRNA:   3'- acagGugUAGGuGCAGCCugUgGCAC- -5'
6978 5' -55.2 NC_001875.2 + 61520 0.66 0.925112
Target:  5'- aGUCCGCGUgcucgcgcuuggcggCCAucaUGUgGGACACgGUGc -3'
miRNA:   3'- aCAGGUGUA---------------GGU---GCAgCCUGUGgCAC- -5'
6978 5' -55.2 NC_001875.2 + 85364 0.66 0.917263
Target:  5'- gUGgCgGCGUUCGCGUUGGcaaACGCCGUu -3'
miRNA:   3'- -ACaGgUGUAGGUGCAGCC---UGUGGCAc -5'
6978 5' -55.2 NC_001875.2 + 23491 0.66 0.917263
Target:  5'- cGUgUugGgCCACGUCGGGCGCUc-- -3'
miRNA:   3'- aCAgGugUaGGUGCAGCCUGUGGcac -5'
6978 5' -55.2 NC_001875.2 + 124563 0.66 0.917263
Target:  5'- aUGUCCGgAUCaaaCACGUCGGcgacccGCGCCa-- -3'
miRNA:   3'- -ACAGGUgUAG---GUGCAGCC------UGUGGcac -5'
6978 5' -55.2 NC_001875.2 + 91562 0.66 0.911367
Target:  5'- uUGcCCGCcgCCACGUaCGGAaacgcgACCGUu -3'
miRNA:   3'- -ACaGGUGuaGGUGCA-GCCUg-----UGGCAc -5'
6978 5' -55.2 NC_001875.2 + 100242 0.66 0.911367
Target:  5'- gGUCCGC--CCACGgcacggcgcCGGACACCa-- -3'
miRNA:   3'- aCAGGUGuaGGUGCa--------GCCUGUGGcac -5'
6978 5' -55.2 NC_001875.2 + 45729 0.66 0.910765
Target:  5'- aUGgCCACGUCCACG-CGaagccguaaacgcGGCGCCGa- -3'
miRNA:   3'- -ACaGGUGUAGGUGCaGC-------------CUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 71903 0.66 0.905232
Target:  5'- uUGUCCgcccacuggGCGUgCGCGUCGGcgaGCGCCuUGa -3'
miRNA:   3'- -ACAGG---------UGUAgGUGCAGCC---UGUGGcAC- -5'
6978 5' -55.2 NC_001875.2 + 63594 0.66 0.905232
Target:  5'- ----aGCA-CCACGUCGGACAUUGUu -3'
miRNA:   3'- acaggUGUaGGUGCAGCCUGUGGCAc -5'
6978 5' -55.2 NC_001875.2 + 69698 0.66 0.905232
Target:  5'- gGUCCACcuuuugggcgugGUCCAgCGacaugaaGGACAUCGUGg -3'
miRNA:   3'- aCAGGUG------------UAGGU-GCag-----CCUGUGGCAC- -5'
6978 5' -55.2 NC_001875.2 + 87841 0.67 0.898859
Target:  5'- cUGggCACGgcgCC-CGUCGGGCuguCCGUGg -3'
miRNA:   3'- -ACagGUGUa--GGuGCAGCCUGu--GGCAC- -5'
6978 5' -55.2 NC_001875.2 + 115662 0.67 0.892251
Target:  5'- aGUgCACAuaaUUCACGUCGGuGCACaCGUu -3'
miRNA:   3'- aCAgGUGU---AGGUGCAGCC-UGUG-GCAc -5'
6978 5' -55.2 NC_001875.2 + 124988 0.67 0.892251
Target:  5'- cGUCCGCuuuacgugcaaGUUgGCGUCGGGCACg--- -3'
miRNA:   3'- aCAGGUG-----------UAGgUGCAGCCUGUGgcac -5'
6978 5' -55.2 NC_001875.2 + 105945 0.67 0.891577
Target:  5'- -uUCCACAUCUuucugcaGCGUCuccuuGGGCGCCGc- -3'
miRNA:   3'- acAGGUGUAGG-------UGCAG-----CCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 9240 0.67 0.885412
Target:  5'- cGUCUcgGUCCACGUCGGGCcaguaacgcaauACCa-- -3'
miRNA:   3'- aCAGGugUAGGUGCAGCCUG------------UGGcac -5'
6978 5' -55.2 NC_001875.2 + 108184 0.67 0.878346
Target:  5'- ---aCACAauUCgCACGUgGGACGCCGUu -3'
miRNA:   3'- acagGUGU--AG-GUGCAgCCUGUGGCAc -5'
6978 5' -55.2 NC_001875.2 + 40809 0.68 0.855834
Target:  5'- --aCCACAUCCACacaGUCGuuccGGCcgGCCGUGg -3'
miRNA:   3'- acaGGUGUAGGUG---CAGC----CUG--UGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.