miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6978 5' -55.2 NC_001875.2 + 45729 0.66 0.910765
Target:  5'- aUGgCCACGUCCACG-CGaagccguaaacgcGGCGCCGa- -3'
miRNA:   3'- -ACaGGUGUAGGUGCaGC-------------CUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 128703 0.68 0.822983
Target:  5'- cG-CCGCGUCCGCGcagCGGGCuucGCCGc- -3'
miRNA:   3'- aCaGGUGUAGGUGCa--GCCUG---UGGCac -5'
6978 5' -55.2 NC_001875.2 + 43991 0.68 0.847912
Target:  5'- cG-CCACGgacagCC-CGaCGGGCGCCGUGc -3'
miRNA:   3'- aCaGGUGUa----GGuGCaGCCUGUGGCAC- -5'
6978 5' -55.2 NC_001875.2 + 40809 0.68 0.855834
Target:  5'- --aCCACAUCCACacaGUCGuuccGGCcgGCCGUGg -3'
miRNA:   3'- acaGGUGUAGGUG---CAGC----CUG--UGGCAC- -5'
6978 5' -55.2 NC_001875.2 + 108184 0.67 0.878346
Target:  5'- ---aCACAauUCgCACGUgGGACGCCGUu -3'
miRNA:   3'- acagGUGU--AG-GUGCAgCCUGUGGCAc -5'
6978 5' -55.2 NC_001875.2 + 9240 0.67 0.885412
Target:  5'- cGUCUcgGUCCACGUCGGGCcaguaacgcaauACCa-- -3'
miRNA:   3'- aCAGGugUAGGUGCAGCCUG------------UGGcac -5'
6978 5' -55.2 NC_001875.2 + 105945 0.67 0.891577
Target:  5'- -uUCCACAUCUuucugcaGCGUCuccuuGGGCGCCGc- -3'
miRNA:   3'- acAGGUGUAGG-------UGCAG-----CCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 124988 0.67 0.892251
Target:  5'- cGUCCGCuuuacgugcaaGUUgGCGUCGGGCACg--- -3'
miRNA:   3'- aCAGGUG-----------UAGgUGCAGCCUGUGgcac -5'
6978 5' -55.2 NC_001875.2 + 71903 0.66 0.905232
Target:  5'- uUGUCCgcccacuggGCGUgCGCGUCGGcgaGCGCCuUGa -3'
miRNA:   3'- -ACAGG---------UGUAgGUGCAGCC---UGUGGcAC- -5'
6978 5' -55.2 NC_001875.2 + 23806 0.68 0.822983
Target:  5'- gUGUCgCuCcgCgGCGUCGGGCgcGCCGUGu -3'
miRNA:   3'- -ACAG-GuGuaGgUGCAGCCUG--UGGCAC- -5'
6978 5' -55.2 NC_001875.2 + 33073 0.68 0.822123
Target:  5'- cGgCCACGUCuugccggCACGUCGGGCacuuGCCGUc -3'
miRNA:   3'- aCaGGUGUAG-------GUGCAGCCUG----UGGCAc -5'
6978 5' -55.2 NC_001875.2 + 100580 0.69 0.805471
Target:  5'- cGUCUGCGUCgaCGCGUacgcgggcCGGGCGCCGg- -3'
miRNA:   3'- aCAGGUGUAG--GUGCA--------GCCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 86736 0.73 0.58587
Target:  5'- cGUCgCACAUgaaggcgCgCACGUCGGGCACCGc- -3'
miRNA:   3'- aCAG-GUGUA-------G-GUGCAGCCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 8477 0.73 0.586892
Target:  5'- cGUCgCGCGgaaacaCCACGcCGGGCGCCGUc -3'
miRNA:   3'- aCAG-GUGUa-----GGUGCaGCCUGUGGCAc -5'
6978 5' -55.2 NC_001875.2 + 102551 0.71 0.693643
Target:  5'- uUGUCCGCGUCgugcaugaaauagaaCGgGUCGGACAgCGUc -3'
miRNA:   3'- -ACAGGUGUAG---------------GUgCAGCCUGUgGCAc -5'
6978 5' -55.2 NC_001875.2 + 19176 0.7 0.749403
Target:  5'- -cUCCAU-UCCGCG-CGGGCACCGc- -3'
miRNA:   3'- acAGGUGuAGGUGCaGCCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 314 0.69 0.778033
Target:  5'- cGUCCGCGcUCCGCucaaaCGGAUGCCGg- -3'
miRNA:   3'- aCAGGUGU-AGGUGca---GCCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 6365 0.69 0.778033
Target:  5'- cGgCCACgauGUCguCGUCGGGCACCGc- -3'
miRNA:   3'- aCaGGUG---UAGguGCAGCCUGUGGCac -5'
6978 5' -55.2 NC_001875.2 + 54372 0.69 0.796473
Target:  5'- gGUUCACAUacagCACGUCGGGcCGCCaguuGUGg -3'
miRNA:   3'- aCAGGUGUAg---GUGCAGCCU-GUGG----CAC- -5'
6978 5' -55.2 NC_001875.2 + 22851 0.69 0.805471
Target:  5'- cGUaCGCGUCCAgccUGGACACCGUGc -3'
miRNA:   3'- aCAgGUGUAGGUgcaGCCUGUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.