miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6979 3' -49.5 NC_001875.2 + 88204 0.66 0.989517
Target:  5'- --gGCGCgcacaacguguaCAAAGUGUACGUGUUUu -3'
miRNA:   3'- aaaCGCGaa----------GUUUCGCGUGCACAAGu -5'
6979 3' -49.5 NC_001875.2 + 131226 0.67 0.988628
Target:  5'- --cGCGCUUgaCAAcGCGCugGUGgUUAa -3'
miRNA:   3'- aaaCGCGAA--GUUuCGCGugCACaAGU- -5'
6979 3' -49.5 NC_001875.2 + 44809 0.67 0.987018
Target:  5'- -gUGCGCUUUGAAGCGCAaaUGc--- -3'
miRNA:   3'- aaACGCGAAGUUUCGCGUgcACaagu -5'
6979 3' -49.5 NC_001875.2 + 38384 0.67 0.985238
Target:  5'- --gGCGCUgaCAAAGUGCGCGgccaUGUUUc -3'
miRNA:   3'- aaaCGCGAa-GUUUCGCGUGC----ACAAGu -5'
6979 3' -49.5 NC_001875.2 + 28672 0.67 0.985238
Target:  5'- --gGCGUgggCGAcauGGCGUACGUGUUg- -3'
miRNA:   3'- aaaCGCGaa-GUU---UCGCGUGCACAAgu -5'
6979 3' -49.5 NC_001875.2 + 108903 0.67 0.985238
Target:  5'- --cGCGCcUCAAcGCGUugGUGgaCGa -3'
miRNA:   3'- aaaCGCGaAGUUuCGCGugCACaaGU- -5'
6979 3' -49.5 NC_001875.2 + 77624 0.67 0.983277
Target:  5'- gUUGUGCUUCAccGUcgacggccuGCACGUGUg-- -3'
miRNA:   3'- aAACGCGAAGUuuCG---------CGUGCACAagu -5'
6979 3' -49.5 NC_001875.2 + 60660 0.67 0.983277
Target:  5'- -aUGCGCguacCAAAGUGCGCGcUGgcggCAg -3'
miRNA:   3'- aaACGCGaa--GUUUCGCGUGC-ACaa--GU- -5'
6979 3' -49.5 NC_001875.2 + 9727 0.67 0.983277
Target:  5'- --cGCGCc-CGAAGCgugGCACGUGUUgAg -3'
miRNA:   3'- aaaCGCGaaGUUUCG---CGUGCACAAgU- -5'
6979 3' -49.5 NC_001875.2 + 117284 0.67 0.981126
Target:  5'- -aUGCGCUUCAcgauGGC-CGCGUGcgCc -3'
miRNA:   3'- aaACGCGAAGUu---UCGcGUGCACaaGu -5'
6979 3' -49.5 NC_001875.2 + 82738 0.67 0.981126
Target:  5'- --aGCGCUUUAc-GCGCACGUaGUagUCGu -3'
miRNA:   3'- aaaCGCGAAGUuuCGCGUGCA-CA--AGU- -5'
6979 3' -49.5 NC_001875.2 + 11567 0.68 0.978774
Target:  5'- --cGCGCUUCAucGCGC-UGcGUUCc -3'
miRNA:   3'- aaaCGCGAAGUuuCGCGuGCaCAAGu -5'
6979 3' -49.5 NC_001875.2 + 96058 0.68 0.978774
Target:  5'- gUUUGCGCgccaucacgggUCAAaaGGUGCACGUGa--- -3'
miRNA:   3'- -AAACGCGa----------AGUU--UCGCGUGCACaagu -5'
6979 3' -49.5 NC_001875.2 + 72756 0.68 0.978774
Target:  5'- -gUGCGCUcCAAcGCGCGUGUGUcgcccUCAa -3'
miRNA:   3'- aaACGCGAaGUUuCGCGUGCACA-----AGU- -5'
6979 3' -49.5 NC_001875.2 + 34903 0.68 0.978774
Target:  5'- --aGCGCgagaUCAAGGCGCGCcaGUUUu -3'
miRNA:   3'- aaaCGCGa---AGUUUCGCGUGcaCAAGu -5'
6979 3' -49.5 NC_001875.2 + 72939 0.68 0.976212
Target:  5'- --cGCgGCUUCGuAGCGCGCGU--UCGc -3'
miRNA:   3'- aaaCG-CGAAGUuUCGCGUGCAcaAGU- -5'
6979 3' -49.5 NC_001875.2 + 81070 0.68 0.970106
Target:  5'- -gUGCGCcgCGacgagaaGAGC-CGCGUGUUCAu -3'
miRNA:   3'- aaACGCGaaGU-------UUCGcGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 115459 0.68 0.966152
Target:  5'- cUUGuCGCUggagaagcggucaaUUggGGUGUGCGUGUUCAc -3'
miRNA:   3'- aAAC-GCGA--------------AGuuUCGCGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 42197 0.69 0.963683
Target:  5'- --gGCGUUUCAAauAGCGCGCGgcggCAc -3'
miRNA:   3'- aaaCGCGAAGUU--UCGCGUGCacaaGU- -5'
6979 3' -49.5 NC_001875.2 + 6732 0.69 0.95594
Target:  5'- aUUGCGCUcgCuu-GUGCGCGUGUa-- -3'
miRNA:   3'- aAACGCGAa-GuuuCGCGUGCACAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.