Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6979 | 5' | -55.6 | NC_001875.2 | + | 87072 | 1.07 | 0.003447 |
Target: 5'- cUCCAGACCGUGCACCGCGUUGAACCUc -3' miRNA: 3'- -AGGUCUGGCACGUGGCGCAACUUGGA- -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 23457 | 0.66 | 0.90965 |
Target: 5'- aUCCcGACaauugCGUGUacaaguuugcguugACCGUGUUGGGCCa -3' miRNA: 3'- -AGGuCUG-----GCACG--------------UGGCGCAACUUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 29111 | 0.66 | 0.901504 |
Target: 5'- cUUCAGACCGccgucgcagcaaaaGCACCGCGUcuUGucGCCc -3' miRNA: 3'- -AGGUCUGGCa-------------CGUGGCGCA--ACu-UGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 31912 | 0.66 | 0.885414 |
Target: 5'- aCUuGGCCGcgcUGCACCGCGcgcGGGCCc -3' miRNA: 3'- aGGuCUGGC---ACGUGGCGCaa-CUUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 5134 | 0.66 | 0.878317 |
Target: 5'- gUCCgcGGA-CGUGCGCCGCuucggguuuUUGAGCCg -3' miRNA: 3'- -AGG--UCUgGCACGUGGCGc--------AACUUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 98033 | 0.67 | 0.870996 |
Target: 5'- cCCGcgcGCCGUGCGCCGaCGggcaagUGcGCCUa -3' miRNA: 3'- aGGUc--UGGCACGUGGC-GCa-----ACuUGGA- -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 78033 | 0.67 | 0.870996 |
Target: 5'- cUCCuGGCgGUGC-CgGCGUUGAugUUc -3' miRNA: 3'- -AGGuCUGgCACGuGgCGCAACUugGA- -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 118323 | 0.67 | 0.855703 |
Target: 5'- gCCGG-CCGcGCGCUGCagGUgaUGAACCUg -3' miRNA: 3'- aGGUCuGGCaCGUGGCG--CA--ACUUGGA- -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 110145 | 0.67 | 0.855703 |
Target: 5'- gCUGGACCGcaGCACCGCGUcGcGCUc -3' miRNA: 3'- aGGUCUGGCa-CGUGGCGCAaCuUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 45164 | 0.67 | 0.847743 |
Target: 5'- gCCAGguaCGUcuccaGCACCGCGUUGAggucgucggucACCa -3' miRNA: 3'- aGGUCug-GCA-----CGUGGCGCAACU-----------UGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 109433 | 0.69 | 0.729022 |
Target: 5'- -gCAGGCCGUGUACgCGCGgcaaaAGCCg -3' miRNA: 3'- agGUCUGGCACGUG-GCGCaac--UUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 42902 | 0.7 | 0.708958 |
Target: 5'- gUCgAGGCUGUGCGCCGCaugccgUGGGCg- -3' miRNA: 3'- -AGgUCUGGCACGUGGCGca----ACUUGga -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 12430 | 0.71 | 0.667076 |
Target: 5'- -gCAGGCCGUugcgugcGCGCCGCGgUGGACg- -3' miRNA: 3'- agGUCUGGCA-------CGUGGCGCaACUUGga -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 111894 | 0.73 | 0.50501 |
Target: 5'- gCCGGACCGUGCGcgccggccgcuCCGUGUacGGGCCg -3' miRNA: 3'- aGGUCUGGCACGU-----------GGCGCAa-CUUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 85832 | 0.67 | 0.847743 |
Target: 5'- aUCAGcacgUCGUGCACCGCGUuguugUGGugCg -3' miRNA: 3'- aGGUCu---GGCACGUGGCGCA-----ACUugGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 12776 | 0.68 | 0.814857 |
Target: 5'- gUCCAG-CCGggGCGCCGCGcacaugcgcacgccGGACCa -3' miRNA: 3'- -AGGUCuGGCa-CGUGGCGCaa------------CUUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 9791 | 0.69 | 0.738931 |
Target: 5'- aUCCGGGCacugcgCGUGCACaguaaCGUUGGGCCg -3' miRNA: 3'- -AGGUCUG------GCACGUGgc---GCAACUUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 127833 | 0.7 | 0.698822 |
Target: 5'- gUCAGACgG-GCGCgGCGUUGGACg- -3' miRNA: 3'- aGGUCUGgCaCGUGgCGCAACUUGga -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 329 | 0.7 | 0.678386 |
Target: 5'- uUCCAG-CCGcUGCACCGCGc---GCCg -3' miRNA: 3'- -AGGUCuGGC-ACGUGGCGCaacuUGGa -5' |
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6979 | 5' | -55.6 | NC_001875.2 | + | 124773 | 0.66 | 0.905314 |
Target: 5'- -aCAGGCCGgugGCgucGCCGCaGcgGAACCa -3' miRNA: 3'- agGUCUGGCa--CG---UGGCG-CaaCUUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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