Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
698 | 5' | -52.1 | AC_000018.1 | + | 8358 | 0.66 | 0.82907 |
Target: 5'- aCCACCGUGCccuuguuUUUCCUUuuGGGCGgCg -3' miRNA: 3'- -GGUGGCAUGau-----GAAGGAGc-UCUGCgG- -5' |
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698 | 5' | -52.1 | AC_000018.1 | + | 34828 | 0.67 | 0.748062 |
Target: 5'- gCACCGaa--AgUUCCUCGcGGugGCCa -3' miRNA: 3'- gGUGGCaugaUgAAGGAGC-UCugCGG- -5' |
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698 | 5' | -52.1 | AC_000018.1 | + | 17225 | 0.67 | 0.748062 |
Target: 5'- -gGCCGUACUuucguCgugaUCUUCGAGugGUg -3' miRNA: 3'- ggUGGCAUGAu----Ga---AGGAGCUCugCGg -5' |
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698 | 5' | -52.1 | AC_000018.1 | + | 16282 | 0.7 | 0.579372 |
Target: 5'- gCCGCCGUgGCcGCgcgCCUgCGGGACcuGCCg -3' miRNA: 3'- -GGUGGCA-UGaUGaa-GGA-GCUCUG--CGG- -5' |
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698 | 5' | -52.1 | AC_000018.1 | + | 8219 | 0.7 | 0.578244 |
Target: 5'- gCCugCGcGCU-CUcgUCCUCGAGcuccgccccugccGCGCCg -3' miRNA: 3'- -GGugGCaUGAuGA--AGGAGCUC-------------UGCGG- -5' |
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698 | 5' | -52.1 | AC_000018.1 | + | 21458 | 0.7 | 0.556898 |
Target: 5'- aCGgUGUGCgcagguagACggCCUCGAuGACGCCg -3' miRNA: 3'- gGUgGCAUGa-------UGaaGGAGCU-CUGCGG- -5' |
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698 | 5' | -52.1 | AC_000018.1 | + | 26260 | 0.71 | 0.523689 |
Target: 5'- -aGCCGUGCUGCUgUCUgGGGAcuugcuugucucCGCCg -3' miRNA: 3'- ggUGGCAUGAUGAaGGAgCUCU------------GCGG- -5' |
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698 | 5' | -52.1 | AC_000018.1 | + | 27174 | 1.14 | 0.000694 |
Target: 5'- aCCACCGUACUACUUCCUCGAGACGCCc -3' miRNA: 3'- -GGUGGCAUGAUGAAGGAGCUCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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