miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
698 5' -52.1 AC_000018.1 + 8358 0.66 0.82907
Target:  5'- aCCACCGUGCccuuguuUUUCCUUuuGGGCGgCg -3'
miRNA:   3'- -GGUGGCAUGau-----GAAGGAGc-UCUGCgG- -5'
698 5' -52.1 AC_000018.1 + 34828 0.67 0.748062
Target:  5'- gCACCGaa--AgUUCCUCGcGGugGCCa -3'
miRNA:   3'- gGUGGCaugaUgAAGGAGC-UCugCGG- -5'
698 5' -52.1 AC_000018.1 + 17225 0.67 0.748062
Target:  5'- -gGCCGUACUuucguCgugaUCUUCGAGugGUg -3'
miRNA:   3'- ggUGGCAUGAu----Ga---AGGAGCUCugCGg -5'
698 5' -52.1 AC_000018.1 + 16282 0.7 0.579372
Target:  5'- gCCGCCGUgGCcGCgcgCCUgCGGGACcuGCCg -3'
miRNA:   3'- -GGUGGCA-UGaUGaa-GGA-GCUCUG--CGG- -5'
698 5' -52.1 AC_000018.1 + 8219 0.7 0.578244
Target:  5'- gCCugCGcGCU-CUcgUCCUCGAGcuccgccccugccGCGCCg -3'
miRNA:   3'- -GGugGCaUGAuGA--AGGAGCUC-------------UGCGG- -5'
698 5' -52.1 AC_000018.1 + 21458 0.7 0.556898
Target:  5'- aCGgUGUGCgcagguagACggCCUCGAuGACGCCg -3'
miRNA:   3'- gGUgGCAUGa-------UGaaGGAGCU-CUGCGG- -5'
698 5' -52.1 AC_000018.1 + 26260 0.71 0.523689
Target:  5'- -aGCCGUGCUGCUgUCUgGGGAcuugcuugucucCGCCg -3'
miRNA:   3'- ggUGGCAUGAUGAaGGAgCUCU------------GCGG- -5'
698 5' -52.1 AC_000018.1 + 27174 1.14 0.000694
Target:  5'- aCCACCGUACUACUUCCUCGAGACGCCc -3'
miRNA:   3'- -GGUGGCAUGAUGAAGGAGCUCUGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.