miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6981 3' -58.8 NC_001875.2 + 65512 0.65 0.784158
Target:  5'- cGGCGuuucuuacGGCgGCCGCCCaCGCCAUc -3'
miRNA:   3'- uCUGCuucuu---CUG-CGGCGGG-GCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 97935 0.66 0.780497
Target:  5'- cGACGAGGGGuacgugaucgacuacGACGCgGCCaCCGaaaCGCc -3'
miRNA:   3'- uCUGCUUCUU---------------CUGCGgCGG-GGCg--GUG- -5'
6981 3' -58.8 NC_001875.2 + 118873 0.66 0.776815
Target:  5'- cGGCGcGGAGcccacGCGCCGCCgcgacgagaCCGUCACa -3'
miRNA:   3'- uCUGCuUCUUc----UGCGGCGG---------GGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 110280 0.66 0.776815
Target:  5'- -cGCGGAGcgcgcGgGCUGCCCCGUCGCc -3'
miRNA:   3'- ucUGCUUCuuc--UgCGGCGGGGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 127974 0.66 0.776815
Target:  5'- uGGCGgcGcGG-UGCUGCCgUGCCACa -3'
miRNA:   3'- uCUGCuuCuUCuGCGGCGGgGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 124259 0.66 0.776815
Target:  5'- uGACGAcAGgcGGCGCguuggucgucgaCGaCCCGCCGCc -3'
miRNA:   3'- uCUGCU-UCuuCUGCG------------GCgGGGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 54513 0.66 0.776815
Target:  5'- -cGCGGuAGuuGGgGCCgGCCaCCGCCGCg -3'
miRNA:   3'- ucUGCU-UCuuCUgCGG-CGG-GGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 32155 0.66 0.776815
Target:  5'- cGGCGgcGAAGACGCgcugcucaacUGgaacuugcuCUCCGCCACg -3'
miRNA:   3'- uCUGCuuCUUCUGCG----------GC---------GGGGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 90363 0.66 0.775891
Target:  5'- cGGCGcAGAccacacaAGAcaCGCCGCgCgCGCCGCa -3'
miRNA:   3'- uCUGCuUCU-------UCU--GCGGCGgG-GCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 63262 0.66 0.775891
Target:  5'- cGGCGGccAGcGGcgccacgcggugcGCGaCCGCCgCCGCCGCg -3'
miRNA:   3'- uCUGCU--UCuUC-------------UGC-GGCGG-GGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 39192 0.66 0.76752
Target:  5'- uGGCGuuuacGGuGCGCCGCUacaaCCGCCACg -3'
miRNA:   3'- uCUGCuucu-UC-UGCGGCGG----GGCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 100915 0.66 0.76752
Target:  5'- -cGCGGAGAc-GCGUCGCCgCGCuCGCu -3'
miRNA:   3'- ucUGCUUCUucUGCGGCGGgGCG-GUG- -5'
6981 3' -58.8 NC_001875.2 + 80949 0.66 0.76752
Target:  5'- cGACGGgcccgucaAGAuuuucGugGCCGCgCCGCC-Cg -3'
miRNA:   3'- uCUGCU--------UCUu----CugCGGCGgGGCGGuG- -5'
6981 3' -58.8 NC_001875.2 + 110693 0.66 0.758108
Target:  5'- cGGcCGcGGAGGGCGCCGCgUUCGUgGCu -3'
miRNA:   3'- -UCuGCuUCUUCUGCGGCG-GGGCGgUG- -5'
6981 3' -58.8 NC_001875.2 + 33223 0.66 0.748586
Target:  5'- cGGGCGcGGGcucgccGGGCGCCGUUUCGgCGCg -3'
miRNA:   3'- -UCUGCuUCU------UCUGCGGCGGGGCgGUG- -5'
6981 3' -58.8 NC_001875.2 + 47971 0.66 0.748586
Target:  5'- cGACGAGGAaccgugcgagcgGGGCGUCGagCCGCCc- -3'
miRNA:   3'- uCUGCUUCU------------UCUGCGGCggGGCGGug -5'
6981 3' -58.8 NC_001875.2 + 41916 0.66 0.747628
Target:  5'- aAGugGcccgcGGAcGCGCCGCCCuuuauaugcgcggCGCCACg -3'
miRNA:   3'- -UCugCuu---CUUcUGCGGCGGG-------------GCGGUG- -5'
6981 3' -58.8 NC_001875.2 + 115882 0.66 0.74571
Target:  5'- uGGCcGGGcAGGAUGCggucaaagugcuggCGCCCCGCCAg -3'
miRNA:   3'- uCUGcUUC-UUCUGCG--------------GCGGGGCGGUg -5'
6981 3' -58.8 NC_001875.2 + 39343 0.66 0.738963
Target:  5'- cAGGCGcAGccuGACGCUGaCgCCCGCCGu -3'
miRNA:   3'- -UCUGCuUCuu-CUGCGGC-G-GGGCGGUg -5'
6981 3' -58.8 NC_001875.2 + 68112 0.66 0.738963
Target:  5'- cGACGccggcGAAG-CGcCCGCCgUCGCCGCg -3'
miRNA:   3'- uCUGCuu---CUUCuGC-GGCGG-GGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.