miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6982 3' -53.9 NC_001875.2 + 12839 0.66 0.935379
Target:  5'- gGCCacgUAGUCgGGCAUCu-GGCGCGCAa -3'
miRNA:   3'- -CGG---GUCGGgUUGUAGuuCUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 25820 0.66 0.933843
Target:  5'- cGCCCGccgagcacugcaacGCCCAGaugaaGUCGGGGCcaugGCGCAUc -3'
miRNA:   3'- -CGGGU--------------CGGGUUg----UAGUUCUG----CGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 50093 0.66 0.933843
Target:  5'- aCgCGGCCCGccgcggaauccacuGCAggUCGuuGACGCGCACg -3'
miRNA:   3'- cGgGUCGGGU--------------UGU--AGUu-CUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 22819 0.66 0.933325
Target:  5'- cGUgCGGUCCGACGgcaccgucggcggCAcGACGUACGCg -3'
miRNA:   3'- -CGgGUCGGGUUGUa------------GUuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 32961 0.66 0.930168
Target:  5'- cGCCaugucGCCCGuguUUAcGACGCGCACg -3'
miRNA:   3'- -CGGgu---CGGGUuguAGUuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 21536 0.66 0.930168
Target:  5'- uGCCgCAGUCCAGCAccgucUCGGcGAcggggcagccCGCGCGCu -3'
miRNA:   3'- -CGG-GUCGGGUUGU-----AGUU-CU----------GCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 2268 0.66 0.930168
Target:  5'- cGCUgCGGgCCAuguugACGUCGuGAUGCGCGCg -3'
miRNA:   3'- -CGG-GUCgGGU-----UGUAGUuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 113174 0.66 0.930168
Target:  5'- cGCCCAGCagCcGCAcCGuGACGCGCuGCg -3'
miRNA:   3'- -CGGGUCGg-GuUGUaGUuCUGCGUG-UG- -5'
6982 3' -53.9 NC_001875.2 + 8834 0.66 0.930168
Target:  5'- cGCCCAaCaCCAACucauUCAGcuGGCGCACGu -3'
miRNA:   3'- -CGGGUcG-GGUUGu---AGUU--CUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 76563 0.66 0.930168
Target:  5'- aGCCUGGUCagguGCGcCGauuuGGACGCGCGCa -3'
miRNA:   3'- -CGGGUCGGgu--UGUaGU----UCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 51106 0.66 0.930168
Target:  5'- uGCCCAGUCgcGCGUCG---UGCACGCc -3'
miRNA:   3'- -CGGGUCGGguUGUAGUucuGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 6920 0.66 0.930168
Target:  5'- cGCUCGGCCgAggGCGU--GGAcCGCGCGCu -3'
miRNA:   3'- -CGGGUCGGgU--UGUAguUCU-GCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 5533 0.66 0.924703
Target:  5'- -gCCGGCCgc-CGUUGAGGCGCGCGu -3'
miRNA:   3'- cgGGUCGGguuGUAGUUCUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 66906 0.66 0.924703
Target:  5'- cUgCAGCCCA--AUCAAauGGCGCACAa -3'
miRNA:   3'- cGgGUCGGGUugUAGUU--CUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 108354 0.66 0.924703
Target:  5'- cGCCCgacguGGCCCAACAcggUCAAcgcaaacuUGUACACg -3'
miRNA:   3'- -CGGG-----UCGGGUUGU---AGUUcu------GCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 11014 0.66 0.924142
Target:  5'- uGCCCAuggugugccuGCCCAugAugggcgaccaguuUCAccACGCGCGCa -3'
miRNA:   3'- -CGGGU----------CGGGUugU-------------AGUucUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 45874 0.66 0.922445
Target:  5'- cGCUCaAGCUCGACuuugagcgcaacuUUGAGGCGCACAg -3'
miRNA:   3'- -CGGG-UCGGGUUGu------------AGUUCUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 111980 0.66 0.918982
Target:  5'- cGCCCGcGCCgCGACGcggcCGAGucuUGCGCGCu -3'
miRNA:   3'- -CGGGU-CGG-GUUGUa---GUUCu--GCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 90417 0.66 0.918982
Target:  5'- cGCagCGGCCCcuguuuACGcUguAGACGCGCGCg -3'
miRNA:   3'- -CGg-GUCGGGu-----UGU-AguUCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 27104 0.66 0.918982
Target:  5'- cGCCCAcGCCCGuccCGUUc--ACGCACAUu -3'
miRNA:   3'- -CGGGU-CGGGUu--GUAGuucUGCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.