miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6982 5' -50.7 NC_001875.2 + 88887 1.1 0.006229
Target:  5'- gUGAUGCGCGACAAGAUCGUCAAGCUGg -3'
miRNA:   3'- -ACUACGCGCUGUUCUAGCAGUUCGAC- -5'
6982 5' -50.7 NC_001875.2 + 256 0.77 0.577029
Target:  5'- ---aGCGCGGCGGGGUCGUUGuauuGCUGg -3'
miRNA:   3'- acuaCGCGCUGUUCUAGCAGUu---CGAC- -5'
6982 5' -50.7 NC_001875.2 + 2468 0.73 0.796595
Target:  5'- uUGuagGCGCGGCAcgAGAUCGUCGuuCUGu -3'
miRNA:   3'- -ACua-CGCGCUGU--UCUAGCAGUucGAC- -5'
6982 5' -50.7 NC_001875.2 + 45756 0.72 0.83228
Target:  5'- cGcgGCGCcgagcccGACAccgAGGUCGUCAAGCg- -3'
miRNA:   3'- aCuaCGCG-------CUGU---UCUAGCAGUUCGac -5'
6982 5' -50.7 NC_001875.2 + 65769 0.71 0.858481
Target:  5'- -cGUGCGCGGCGGGcggcggcgcgucGUCGUUGAGCg- -3'
miRNA:   3'- acUACGCGCUGUUC------------UAGCAGUUCGac -5'
6982 5' -50.7 NC_001875.2 + 127967 0.71 0.874242
Target:  5'- cUGAaGCGCGugGAGAuugcggcggaUCGUCAcauguuggaGGCUGc -3'
miRNA:   3'- -ACUaCGCGCugUUCU----------AGCAGU---------UCGAC- -5'
6982 5' -50.7 NC_001875.2 + 112359 0.71 0.889041
Target:  5'- cUGGUuuaGCGGCAcGAUgGUCAGGCUGc -3'
miRNA:   3'- -ACUAcg-CGCUGUuCUAgCAGUUCGAC- -5'
6982 5' -50.7 NC_001875.2 + 90849 0.71 0.896066
Target:  5'- aGGUGCGCGACGucgucaaauucGGuGUUGUCGAacguGCUGg -3'
miRNA:   3'- aCUACGCGCUGU-----------UC-UAGCAGUU----CGAC- -5'
6982 5' -50.7 NC_001875.2 + 112953 0.71 0.896066
Target:  5'- -cGUGCGCGACAA-AUCGUCGGGa-- -3'
miRNA:   3'- acUACGCGCUGUUcUAGCAGUUCgac -5'
6982 5' -50.7 NC_001875.2 + 79225 0.7 0.902836
Target:  5'- uUGuUGUGCGACGAGAUguagcUGuUUAAGCUGg -3'
miRNA:   3'- -ACuACGCGCUGUUCUA-----GC-AGUUCGAC- -5'
6982 5' -50.7 NC_001875.2 + 11882 0.69 0.932755
Target:  5'- -uGUGCGCGGCGacggagGGGUCGUCGacaaugagcAGCUc -3'
miRNA:   3'- acUACGCGCUGU------UCUAGCAGU---------UCGAc -5'
6982 5' -50.7 NC_001875.2 + 66029 0.69 0.942869
Target:  5'- cGA-GCGCGugGAGuacauucCGcUCAAGCUGg -3'
miRNA:   3'- aCUaCGCGCugUUCua-----GC-AGUUCGAC- -5'
6982 5' -50.7 NC_001875.2 + 129433 0.69 0.947533
Target:  5'- cGGUGCGCGACA-----GUCAGGCc- -3'
miRNA:   3'- aCUACGCGCUGUucuagCAGUUCGac -5'
6982 5' -50.7 NC_001875.2 + 7888 0.69 0.951938
Target:  5'- ---cGcCGCGGCAGu-UUGUCAAGCUGg -3'
miRNA:   3'- acuaC-GCGCUGUUcuAGCAGUUCGAC- -5'
6982 5' -50.7 NC_001875.2 + 16237 0.69 0.951938
Target:  5'- gUGAcUGCgGCGACGAGGcCGUCAcGCg- -3'
miRNA:   3'- -ACU-ACG-CGCUGUUCUaGCAGUuCGac -5'
6982 5' -50.7 NC_001875.2 + 126531 0.68 0.970235
Target:  5'- aGGUaGCGCG-CAAuggaguGGUCGUCGGGCg- -3'
miRNA:   3'- aCUA-CGCGCuGUU------CUAGCAGUUCGac -5'
6982 5' -50.7 NC_001875.2 + 49879 0.67 0.978453
Target:  5'- ---gGCGCcaacCAAGugGUCGUCGAGCUGc -3'
miRNA:   3'- acuaCGCGcu--GUUC--UAGCAGUUCGAC- -5'
6982 5' -50.7 NC_001875.2 + 62368 0.67 0.980778
Target:  5'- gGGUcGCGCGcCAGGGagGUCGAcauGCUGa -3'
miRNA:   3'- aCUA-CGCGCuGUUCUagCAGUU---CGAC- -5'
6982 5' -50.7 NC_001875.2 + 13151 0.67 0.98291
Target:  5'- ---aGCGUGGCA---UCGUCGAGCa- -3'
miRNA:   3'- acuaCGCGCUGUucuAGCAGUUCGac -5'
6982 5' -50.7 NC_001875.2 + 24493 0.66 0.984858
Target:  5'- -uGUGCGCGcaaaGCAAGAUCGgcgCAcGCg- -3'
miRNA:   3'- acUACGCGC----UGUUCUAGCa--GUuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.