miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6982 5' -50.7 NC_001875.2 + 112359 0.71 0.889041
Target:  5'- cUGGUuuaGCGGCAcGAUgGUCAGGCUGc -3'
miRNA:   3'- -ACUAcg-CGCUGUuCUAgCAGUUCGAC- -5'
6982 5' -50.7 NC_001875.2 + 127967 0.71 0.874242
Target:  5'- cUGAaGCGCGugGAGAuugcggcggaUCGUCAcauguuggaGGCUGc -3'
miRNA:   3'- -ACUaCGCGCugUUCU----------AGCAGU---------UCGAC- -5'
6982 5' -50.7 NC_001875.2 + 65769 0.71 0.858481
Target:  5'- -cGUGCGCGGCGGGcggcggcgcgucGUCGUUGAGCg- -3'
miRNA:   3'- acUACGCGCUGUUC------------UAGCAGUUCGac -5'
6982 5' -50.7 NC_001875.2 + 45756 0.72 0.83228
Target:  5'- cGcgGCGCcgagcccGACAccgAGGUCGUCAAGCg- -3'
miRNA:   3'- aCuaCGCG-------CUGU---UCUAGCAGUUCGac -5'
6982 5' -50.7 NC_001875.2 + 2468 0.73 0.796595
Target:  5'- uUGuagGCGCGGCAcgAGAUCGUCGuuCUGu -3'
miRNA:   3'- -ACua-CGCGCUGU--UCUAGCAGUucGAC- -5'
6982 5' -50.7 NC_001875.2 + 256 0.77 0.577029
Target:  5'- ---aGCGCGGCGGGGUCGUUGuauuGCUGg -3'
miRNA:   3'- acuaCGCGCUGUUCUAGCAGUu---CGAC- -5'
6982 5' -50.7 NC_001875.2 + 88887 1.1 0.006229
Target:  5'- gUGAUGCGCGACAAGAUCGUCAAGCUGg -3'
miRNA:   3'- -ACUACGCGCUGUUCUAGCAGUUCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.