miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6983 5' -60.2 NC_001875.2 + 108991 0.66 0.725276
Target:  5'- cGGUGUccaGGcUGGaCGCGUacgucGUGCCGCCg -3'
miRNA:   3'- cCCACA---UC-ACCgGCGUAc----CGCGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 110519 0.66 0.721407
Target:  5'- -----aGGUGGCCGCGggccaccUGGCGCUucuugagcuuuucuGCCa -3'
miRNA:   3'- cccacaUCACCGGCGU-------ACCGCGG--------------CGG- -5'
6983 5' -60.2 NC_001875.2 + 83583 0.66 0.715584
Target:  5'- aGGUGUcccGGCgG---GGCGCCGCCg -3'
miRNA:   3'- cCCACAucaCCGgCguaCCGCGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 33464 0.66 0.715584
Target:  5'- cGGcc-AGUGGUCGaaaGUGGCG-CGCCg -3'
miRNA:   3'- cCCacaUCACCGGCg--UACCGCgGCGG- -5'
6983 5' -60.2 NC_001875.2 + 29261 0.66 0.715584
Target:  5'- cGGGUGcgc-GGCCGCcgaccGCGCCGgCg -3'
miRNA:   3'- -CCCACaucaCCGGCGuac--CGCGGCgG- -5'
6983 5' -60.2 NC_001875.2 + 16840 0.66 0.715584
Target:  5'- -uGUGUGcuagcaugcGUaGCCGUGUuaaucGGCGCCGCCa -3'
miRNA:   3'- ccCACAU---------CAcCGGCGUA-----CCGCGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 71121 0.66 0.715584
Target:  5'- uGGUGUugcuGUGGCUggGCGgccucaGCGCgGCCg -3'
miRNA:   3'- cCCACAu---CACCGG--CGUac----CGCGgCGG- -5'
6983 5' -60.2 NC_001875.2 + 70195 0.66 0.705824
Target:  5'- cGGGcGgcGacggcgaccacUGGgCGCccgaGGCGCCGCCg -3'
miRNA:   3'- -CCCaCauC-----------ACCgGCGua--CCGCGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 13137 0.66 0.705824
Target:  5'- cGGUGUAGUuuuGCaGCGUGGCaUCGUCg -3'
miRNA:   3'- cCCACAUCAc--CGgCGUACCGcGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 28014 0.66 0.705824
Target:  5'- aGGGUGgcGaaGGCCcaGCAc-GCGCCGCa -3'
miRNA:   3'- -CCCACauCa-CCGG--CGUacCGCGGCGg -5'
6983 5' -60.2 NC_001875.2 + 77258 0.66 0.705824
Target:  5'- ---cGUGGgcgcGCCGCcgGGCgaagcgGCCGCCg -3'
miRNA:   3'- cccaCAUCac--CGGCGuaCCG------CGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 84215 0.66 0.696004
Target:  5'- cGGUaGUAG-GGCCGCGc-GCGCuCGUCc -3'
miRNA:   3'- cCCA-CAUCaCCGGCGUacCGCG-GCGG- -5'
6983 5' -60.2 NC_001875.2 + 26168 0.66 0.696004
Target:  5'- cGGUGUgugGGUGGCCGgCAaggagcUGGUGaaGCg -3'
miRNA:   3'- cCCACA---UCACCGGC-GU------ACCGCggCGg -5'
6983 5' -60.2 NC_001875.2 + 33930 0.66 0.696004
Target:  5'- -cGUGaGGUGGCC-CAgcuuGCGCCGCg -3'
miRNA:   3'- ccCACaUCACCGGcGUac--CGCGGCGg -5'
6983 5' -60.2 NC_001875.2 + 78158 0.66 0.696004
Target:  5'- -cGUGUug-GcGCUGCGcGGCGCCGUCu -3'
miRNA:   3'- ccCACAucaC-CGGCGUaCCGCGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 125332 0.66 0.696004
Target:  5'- cGGUGgacGGcGGCCaGCGuguUGGCGCgGCa -3'
miRNA:   3'- cCCACa--UCaCCGG-CGU---ACCGCGgCGg -5'
6983 5' -60.2 NC_001875.2 + 60369 0.66 0.690087
Target:  5'- aGGUGUAcgaaucguUGGCgCGCAcgaUGGCcgaagagaacguguuGCCGCCg -3'
miRNA:   3'- cCCACAUc-------ACCG-GCGU---ACCG---------------CGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 33223 0.66 0.686133
Target:  5'- cGGGcGcg--GGCuCGCcgGGCGCCGUUu -3'
miRNA:   3'- -CCCaCaucaCCG-GCGuaCCGCGGCGG- -5'
6983 5' -60.2 NC_001875.2 + 11818 0.66 0.686133
Target:  5'- cGGUGUuuGUGGUCGCGccggUGGCGggGUCg -3'
miRNA:   3'- cCCACAu-CACCGGCGU----ACCGCggCGG- -5'
6983 5' -60.2 NC_001875.2 + 86349 0.66 0.686133
Target:  5'- -uGUGUGGUGGUgGUguuUGGCaCCGCg -3'
miRNA:   3'- ccCACAUCACCGgCGu--ACCGcGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.