miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6984 3' -65.2 NC_001875.2 + 23769 0.66 0.49427
Target:  5'- uGCaGCCCGCagagcgcacguuGCCCagguCGCCgacgugucgcuccgCGGCGUCg -3'
miRNA:   3'- -CG-CGGGCG------------CGGGc---GCGGaa------------GCCGCAG- -5'
6984 3' -65.2 NC_001875.2 + 32970 0.66 0.493362
Target:  5'- gGCGCCCGCGCaCauuaGCGCCaccaacUC-GCGg- -3'
miRNA:   3'- -CGCGGGCGCG-Gg---CGCGGa-----AGcCGCag -5'
6984 3' -65.2 NC_001875.2 + 128735 0.66 0.493362
Target:  5'- -gGUCUGCGCgcgagCCGCGCCc-CGGCG-Cg -3'
miRNA:   3'- cgCGGGCGCG-----GGCGCGGaaGCCGCaG- -5'
6984 3' -65.2 NC_001875.2 + 29874 0.66 0.493362
Target:  5'- aCGCCUGCGUCgCGUucGCCacCGGCGcCu -3'
miRNA:   3'- cGCGGGCGCGG-GCG--CGGaaGCCGCaG- -5'
6984 3' -65.2 NC_001875.2 + 54577 0.66 0.493362
Target:  5'- gGCGgCCGCuucGCCCggcggcGCGCCcaCGGCG-Cg -3'
miRNA:   3'- -CGCgGGCG---CGGG------CGCGGaaGCCGCaG- -5'
6984 3' -65.2 NC_001875.2 + 31595 0.66 0.493362
Target:  5'- gGUGUCCG-GCgCCGUGCCgUgGGCGg- -3'
miRNA:   3'- -CGCGGGCgCG-GGCGCGGaAgCCGCag -5'
6984 3' -65.2 NC_001875.2 + 115904 0.66 0.493362
Target:  5'- aGUGCUgGCGCCC-CGCCagCuGgGUCa -3'
miRNA:   3'- -CGCGGgCGCGGGcGCGGaaGcCgCAG- -5'
6984 3' -65.2 NC_001875.2 + 39051 0.66 0.493362
Target:  5'- gGCGCuguaCCGCaagcgcaugGCCauuguGCGCCg-CGGCGUCg -3'
miRNA:   3'- -CGCG----GGCG---------CGGg----CGCGGaaGCCGCAG- -5'
6984 3' -65.2 NC_001875.2 + 55370 0.66 0.493362
Target:  5'- uCGUCCGCGgCCGUuuuGCCggCGcCGUCg -3'
miRNA:   3'- cGCGGGCGCgGGCG---CGGaaGCcGCAG- -5'
6984 3' -65.2 NC_001875.2 + 12422 0.66 0.493362
Target:  5'- cGCGCCaagcaggccguUGCGUgCGCGCCg-CGGUGg- -3'
miRNA:   3'- -CGCGG-----------GCGCGgGCGCGGaaGCCGCag -5'
6984 3' -65.2 NC_001875.2 + 96200 0.66 0.491549
Target:  5'- cGCGCacuUGCG-CUGCGCCagauaguccgcgUCGGCGUUg -3'
miRNA:   3'- -CGCGg--GCGCgGGCGCGGa-----------AGCCGCAG- -5'
6984 3' -65.2 NC_001875.2 + 57475 0.66 0.484329
Target:  5'- aCGCgCCGCGgCCGCGCa--CGcCGUCu -3'
miRNA:   3'- cGCG-GGCGCgGGCGCGgaaGCcGCAG- -5'
6984 3' -65.2 NC_001875.2 + 10339 0.66 0.484329
Target:  5'- cGC-CCCGCGCCCgugauucaaauuGCGCCgggcuaCGGCc-- -3'
miRNA:   3'- -CGcGGGCGCGGG------------CGCGGaa----GCCGcag -5'
6984 3' -65.2 NC_001875.2 + 39362 0.66 0.484329
Target:  5'- aCGCCCGcCGUCuCGUGCCUacccugCGGCc-- -3'
miRNA:   3'- cGCGGGC-GCGG-GCGCGGAa-----GCCGcag -5'
6984 3' -65.2 NC_001875.2 + 31707 0.66 0.484329
Target:  5'- uGCGCgC-CGCCgGCGCauuacuUUCGGCGa- -3'
miRNA:   3'- -CGCGgGcGCGGgCGCGg-----AAGCCGCag -5'
6984 3' -65.2 NC_001875.2 + 12146 0.66 0.484329
Target:  5'- -aGCCCgaGCGCaaccaGCGCUUUCGGCu-- -3'
miRNA:   3'- cgCGGG--CGCGgg---CGCGGAAGCCGcag -5'
6984 3' -65.2 NC_001875.2 + 40650 0.66 0.484329
Target:  5'- cGCGCaCGCGCCgGCuGUUgcgCGGCGa- -3'
miRNA:   3'- -CGCGgGCGCGGgCG-CGGaa-GCCGCag -5'
6984 3' -65.2 NC_001875.2 + 29847 0.66 0.484329
Target:  5'- gGC-CCCGUGCCCgGCaCCUgggaaaaCGGgGUCg -3'
miRNA:   3'- -CGcGGGCGCGGG-CGcGGAa------GCCgCAG- -5'
6984 3' -65.2 NC_001875.2 + 31929 0.66 0.481635
Target:  5'- cGCGCgCGgGCCCGCucguugcgcucgagGCUgcCGGCGa- -3'
miRNA:   3'- -CGCGgGCgCGGGCG--------------CGGaaGCCGCag -5'
6984 3' -65.2 NC_001875.2 + 33941 0.66 0.475376
Target:  5'- gGCGUCgGCGCCgacgcccgcaaCGUGCCcgugCGGCG-Cg -3'
miRNA:   3'- -CGCGGgCGCGG-----------GCGCGGaa--GCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.