miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6984 5' -50.7 NC_001875.2 + 127828 0.66 0.992372
Target:  5'- -gAGCaGUCA--GACGGGCGC-GGCGUu -3'
miRNA:   3'- ugUUG-CAGUacUUGCUCGCGuUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 32117 0.66 0.992372
Target:  5'- gACAagGCGcgCAcuuGCGAGCGCcgcauAGCGCu -3'
miRNA:   3'- -UGU--UGCa-GUacuUGCUCGCGu----UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 113623 0.66 0.992372
Target:  5'- cGCGGCGgCAaGAGCG-GCGacGGCGCc -3'
miRNA:   3'- -UGUUGCaGUaCUUGCuCGCguUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 75255 0.66 0.992372
Target:  5'- gGCGGCGUCGgcGAugGcggcGGCGUcGGCGa -3'
miRNA:   3'- -UGUUGCAGUa-CUugC----UCGCGuUCGCg -5'
6984 5' -50.7 NC_001875.2 + 40469 0.66 0.992372
Target:  5'- -gGGCGUgGUGGugcCGGGCGuCAugucGCGCa -3'
miRNA:   3'- ugUUGCAgUACUu--GCUCGC-GUu---CGCG- -5'
6984 5' -50.7 NC_001875.2 + 38281 0.66 0.992372
Target:  5'- cGCAGCGcgCGUacGACGAcGCggugGCGAGCGCc -3'
miRNA:   3'- -UGUUGCa-GUAc-UUGCU-CG----CGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 121496 0.66 0.992372
Target:  5'- cCGGCG-CAauuUGAaucACGGGCGCGGG-GCg -3'
miRNA:   3'- uGUUGCaGU---ACU---UGCUCGCGUUCgCG- -5'
6984 5' -50.7 NC_001875.2 + 69300 0.66 0.992372
Target:  5'- cACAACGUUu---GCcaacGCGCAAGCGUc -3'
miRNA:   3'- -UGUUGCAGuacuUGcu--CGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 64737 0.66 0.992372
Target:  5'- -gGGCGaCGUGGGCGAaGCGaucugguacaaCAAGUGCa -3'
miRNA:   3'- ugUUGCaGUACUUGCU-CGC-----------GUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 73746 0.66 0.992372
Target:  5'- uACGACGcUAacAACGuGCGCAcGCGCc -3'
miRNA:   3'- -UGUUGCaGUacUUGCuCGCGUuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 105609 0.66 0.992372
Target:  5'- cGCAGCGcCAaGAGCGGuUGCAcguguGGUGCg -3'
miRNA:   3'- -UGUUGCaGUaCUUGCUcGCGU-----UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 14667 0.66 0.992372
Target:  5'- uGCAGCcaCAaacUGGaauacgcuuGCGAGCGCGAccuGCGCg -3'
miRNA:   3'- -UGUUGcaGU---ACU---------UGCUCGCGUU---CGCG- -5'
6984 5' -50.7 NC_001875.2 + 131525 0.66 0.992372
Target:  5'- gGCAucCGUU-UGAGCgGAGCGCGgacgaGGUGCu -3'
miRNA:   3'- -UGUu-GCAGuACUUG-CUCGCGU-----UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 17772 0.66 0.992372
Target:  5'- -aGACGUCGgaaacuAGCGuGGCGUAcGCGCa -3'
miRNA:   3'- ugUUGCAGUac----UUGC-UCGCGUuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 61589 0.66 0.992372
Target:  5'- aGCGGCGaCGgcu-CGGGCGCcggcGGCGCu -3'
miRNA:   3'- -UGUUGCaGUacuuGCUCGCGu---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 121822 0.66 0.992372
Target:  5'- cACGAUGUgcUAUGAGCGcugaAGCGguucAGCGCa -3'
miRNA:   3'- -UGUUGCA--GUACUUGC----UCGCgu--UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 29784 0.66 0.992372
Target:  5'- -aAAUGaUCGUGcgggacuguGCGGGCGCuggcGGCGCa -3'
miRNA:   3'- ugUUGC-AGUACu--------UGCUCGCGu---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 37754 0.66 0.992372
Target:  5'- uUAACa--AUGAACGuGCaCGAGCGCa -3'
miRNA:   3'- uGUUGcagUACUUGCuCGcGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 80267 0.66 0.991699
Target:  5'- gACGACG-CAUGuGGCGucaauuauacggacaAGCGCGucGGCGUg -3'
miRNA:   3'- -UGUUGCaGUAC-UUGC---------------UCGCGU--UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 37413 0.66 0.991225
Target:  5'- aACGGCG-CGUGGAaGAG-GCcguGGCGCa -3'
miRNA:   3'- -UGUUGCaGUACUUgCUCgCGu--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.