miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6984 5' -50.7 NC_001875.2 + 90278 1.13 0.004209
Target:  5'- gACAACGUCAUGAACGAGCGCAAGCGCa -3'
miRNA:   3'- -UGUUGCAGUACUUGCUCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 87020 0.88 0.157019
Target:  5'- gACAGCGUCGUGAACGGGCGCcucaucuacuGCGUg -3'
miRNA:   3'- -UGUUGCAGUACUUGCUCGCGuu--------CGCG- -5'
6984 5' -50.7 NC_001875.2 + 33431 0.87 0.188983
Target:  5'- cGCAAUGUCGUGcgUGAGCGCGuucAGCGCg -3'
miRNA:   3'- -UGUUGCAGUACuuGCUCGCGU---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 59111 0.86 0.215199
Target:  5'- gACGGCGUCGcUGGcCGAcGCGCAAGCGCa -3'
miRNA:   3'- -UGUUGCAGU-ACUuGCU-CGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 72551 0.81 0.412731
Target:  5'- aACAACGggcgcuGCGGGCGCGGGCGCg -3'
miRNA:   3'- -UGUUGCaguacuUGCUCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 2803 0.8 0.431196
Target:  5'- gAUGAgGUCu--GGCGAGCGCGAGCGCg -3'
miRNA:   3'- -UGUUgCAGuacUUGCUCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 104730 0.79 0.48933
Target:  5'- gGCAAUGUgCGUGAacgggACGGGCGUggGCGUc -3'
miRNA:   3'- -UGUUGCA-GUACU-----UGCUCGCGuuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 74204 0.79 0.499378
Target:  5'- uGCAACGcgCAacUGGGCGGGCGUuuGGCGCa -3'
miRNA:   3'- -UGUUGCa-GU--ACUUGCUCGCGu-UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 58695 0.79 0.509518
Target:  5'- uACAGCGUUGUGGA-GAGCGUGuacAGCGCg -3'
miRNA:   3'- -UGUUGCAGUACUUgCUCGCGU---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 95381 0.78 0.530046
Target:  5'- aACGGCGUCGUGuccaauuCGAGcCGC-AGCGCg -3'
miRNA:   3'- -UGUUGCAGUACuu-----GCUC-GCGuUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 30913 0.78 0.561377
Target:  5'- -aGACGUUGUGGgaGCGAGCGCGgcgAGCGUc -3'
miRNA:   3'- ugUUGCAGUACU--UGCUCGCGU---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 16912 0.77 0.571937
Target:  5'- gACGACGgcgcgggccUCGUGuuUGAGCGCAucGGCGCg -3'
miRNA:   3'- -UGUUGC---------AGUACuuGCUCGCGU--UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 69705 0.77 0.582544
Target:  5'- -uGACGUCAUGGACGcGCGUc-GCGCu -3'
miRNA:   3'- ugUUGCAGUACUUGCuCGCGuuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 52369 0.77 0.593191
Target:  5'- cCAGCGUCcaaGAGCGcaAGUGCAGGUGCg -3'
miRNA:   3'- uGUUGCAGua-CUUGC--UCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 59457 0.77 0.614569
Target:  5'- --uGCGUCAUGuGCGuGCGCAAaauuGCGCa -3'
miRNA:   3'- uguUGCAGUACuUGCuCGCGUU----CGCG- -5'
6984 5' -50.7 NC_001875.2 + 83468 0.76 0.625284
Target:  5'- cGCcGCGUC--GGACGGGCGCGcgauuAGCGCg -3'
miRNA:   3'- -UGuUGCAGuaCUUGCUCGCGU-----UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 59586 0.76 0.657427
Target:  5'- uGCAGCGUggccgaCGUGcGCGAGCaCGGGCGCu -3'
miRNA:   3'- -UGUUGCA------GUACuUGCUCGcGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 54721 0.76 0.664908
Target:  5'- gGCGACGggCGUGGacagguagccguGCGGGCGCAccgccggcaccgccAGCGCa -3'
miRNA:   3'- -UGUUGCa-GUACU------------UGCUCGCGU--------------UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 47607 0.76 0.66811
Target:  5'- uACAGCGaCAuuuuccUGGACGAGCGC--GCGCg -3'
miRNA:   3'- -UGUUGCaGU------ACUUGCUCGCGuuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 80276 0.75 0.686191
Target:  5'- cGC-GCGUCGUGAacggcucgcacuugACGAGCGCcgucgccAGCGCg -3'
miRNA:   3'- -UGuUGCAGUACU--------------UGCUCGCGu------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.