miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6984 5' -50.7 NC_001875.2 + 442 0.72 0.836376
Target:  5'- aGCGugcCGUCGUGcaccGGCGAGUGUucGCGCu -3'
miRNA:   3'- -UGUu--GCAGUAC----UUGCUCGCGuuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 820 0.7 0.917446
Target:  5'- aACAGCuugcUgGUGGugGGGCGguGGUGCa -3'
miRNA:   3'- -UGUUGc---AgUACUugCUCGCguUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 1024 0.67 0.976505
Target:  5'- uGCAGCG-CGUG-GCGgggcccgaGGCGCAcagcguugGGCGCa -3'
miRNA:   3'- -UGUUGCaGUACuUGC--------UCGCGU--------UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 1297 0.69 0.953055
Target:  5'- uCGACGUgGUGAACGAuGCGgAGGUu- -3'
miRNA:   3'- uGUUGCAgUACUUGCU-CGCgUUCGcg -5'
6984 5' -50.7 NC_001875.2 + 1495 0.7 0.916844
Target:  5'- aGCGguGCGUCAgcGACGAcccugccuuuuggGUGCGGGCGCu -3'
miRNA:   3'- -UGU--UGCAGUacUUGCU-------------CGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 1885 0.68 0.965863
Target:  5'- aGCAguGCGUCAgcGGCGAcccugcuuuucggguGCGCAcGCGCu -3'
miRNA:   3'- -UGU--UGCAGUacUUGCU---------------CGCGUuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 2283 0.71 0.884222
Target:  5'- -uGACGUCGUGAuGCGcGCGCGccguggccGCGCg -3'
miRNA:   3'- ugUUGCAGUACU-UGCuCGCGUu-------CGCG- -5'
6984 5' -50.7 NC_001875.2 + 2803 0.8 0.431196
Target:  5'- gAUGAgGUCu--GGCGAGCGCGAGCGCg -3'
miRNA:   3'- -UGUUgCAGuacUUGCUCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 2828 0.7 0.913798
Target:  5'- gGCGACGUUGgcgaguagcUGGGCGAauaguuuaacaggguGgGCGAGCGCg -3'
miRNA:   3'- -UGUUGCAGU---------ACUUGCU---------------CgCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 3156 0.67 0.983323
Target:  5'- cGCGGCGUCGggcGGCGAGUaggugagccgGCGGccGCGCa -3'
miRNA:   3'- -UGUUGCAGUac-UUGCUCG----------CGUU--CGCG- -5'
6984 5' -50.7 NC_001875.2 + 3212 0.74 0.761583
Target:  5'- gGCGGCGgu-UGGAUG-GCGUggGCGCg -3'
miRNA:   3'- -UGUUGCaguACUUGCuCGCGuuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 5440 0.66 0.991225
Target:  5'- gACAACGUgCAagaUGGACGuguGCGCAgccAGCu- -3'
miRNA:   3'- -UGUUGCA-GU---ACUUGCu--CGCGU---UCGcg -5'
6984 5' -50.7 NC_001875.2 + 5911 0.66 0.988527
Target:  5'- uACAGCGccggCAUGGcguuggguaGCGccGCGCAggugGGCGCg -3'
miRNA:   3'- -UGUUGCa---GUACU---------UGCu-CGCGU----UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 9965 0.68 0.967838
Target:  5'- gACAGCGUgGUGcaauuGACGGcGUGCAGGC-Ca -3'
miRNA:   3'- -UGUUGCAgUAC-----UUGCU-CGCGUUCGcG- -5'
6984 5' -50.7 NC_001875.2 + 10646 0.74 0.760586
Target:  5'- cCAGCGUgCAguacuUGGGCGgcggacugcacuuGGCGCAGGCGCu -3'
miRNA:   3'- uGUUGCA-GU-----ACUUGC-------------UCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 11987 0.74 0.751559
Target:  5'- gACGGCGUUggGcGCGGGUguggugGCGAGCGCg -3'
miRNA:   3'- -UGUUGCAGuaCuUGCUCG------CGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 12133 0.71 0.869189
Target:  5'- cGCGGCG-CGgaaGAGCccGAGCGCAaccAGCGCu -3'
miRNA:   3'- -UGUUGCaGUa--CUUG--CUCGCGU---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 12416 0.69 0.939354
Target:  5'- -aAACuUCAUGAACGAGCuGCGGGUc- -3'
miRNA:   3'- ugUUGcAGUACUUGCUCG-CGUUCGcg -5'
6984 5' -50.7 NC_001875.2 + 12930 0.66 0.987443
Target:  5'- uGCAGCGUUcuucugcaaaaacuuGUGAcggucucgucgcgGCGGGCGUggGCuccGCg -3'
miRNA:   3'- -UGUUGCAG---------------UACU-------------UGCUCGCGuuCG---CG- -5'
6984 5' -50.7 NC_001875.2 + 14167 0.67 0.983323
Target:  5'- gAC-ACGUgAUGGGgcCGuGCGCaAAGCGCc -3'
miRNA:   3'- -UGuUGCAgUACUU--GCuCGCG-UUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.