miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6984 5' -50.7 NC_001875.2 + 97030 0.73 0.790855
Target:  5'- gGCAGCGUCGUaAACGcuUGCcGGCGCa -3'
miRNA:   3'- -UGUUGCAGUAcUUGCucGCGuUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 10646 0.74 0.760586
Target:  5'- cCAGCGUgCAguacuUGGGCGgcggacugcacuuGGCGCAGGCGCu -3'
miRNA:   3'- uGUUGCA-GU-----ACUUGC-------------UCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 62460 0.74 0.77148
Target:  5'- cACGuGCGUUucgGUGGACGGcGCGCAgcgGGCGCa -3'
miRNA:   3'- -UGU-UGCAG---UACUUGCU-CGCGU---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 96970 0.74 0.77148
Target:  5'- gACGACGcUGUGGACGucguGCGCAAGuUGCg -3'
miRNA:   3'- -UGUUGCaGUACUUGCu---CGCGUUC-GCG- -5'
6984 5' -50.7 NC_001875.2 + 85228 0.73 0.781241
Target:  5'- gUAGCGccgCAUGucGACGAGCGCGgguuccgcgcucGGCGCg -3'
miRNA:   3'- uGUUGCa--GUAC--UUGCUCGCGU------------UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 74298 0.73 0.781241
Target:  5'- aACAGCG-CAUcgccuACGGcGCGCAGGCGCc -3'
miRNA:   3'- -UGUUGCaGUAcu---UGCU-CGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 35128 0.73 0.790855
Target:  5'- -gGACGUCA---ACGGGCGCAAGUuuaGCg -3'
miRNA:   3'- ugUUGCAGUacuUGCUCGCGUUCG---CG- -5'
6984 5' -50.7 NC_001875.2 + 47553 0.73 0.790855
Target:  5'- cGCGACGcguaUCAUG-ACGAGCGCAAcGaaaGCa -3'
miRNA:   3'- -UGUUGC----AGUACuUGCUCGCGUU-Cg--CG- -5'
6984 5' -50.7 NC_001875.2 + 77672 0.73 0.790855
Target:  5'- cGCAGCGcCGcUGucCGAGCGCGuauuuGCGCg -3'
miRNA:   3'- -UGUUGCaGU-ACuuGCUCGCGUu----CGCG- -5'
6984 5' -50.7 NC_001875.2 + 11987 0.74 0.751559
Target:  5'- gACGGCGUUggGcGCGGGUguggugGCGAGCGCg -3'
miRNA:   3'- -UGUUGCAGuaCuUGCUCG------CGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 83009 0.74 0.731177
Target:  5'- uACGGCGUCAgcugGAccGCGcGCaGCGAGUGCg -3'
miRNA:   3'- -UGUUGCAGUa---CU--UGCuCG-CGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 80276 0.75 0.686191
Target:  5'- cGC-GCGUCGUGAacggcucgcacuugACGAGCGCcgucgccAGCGCg -3'
miRNA:   3'- -UGuUGCAGUACU--------------UGCUCGCGu------UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 33431 0.87 0.188983
Target:  5'- cGCAAUGUCGUGcgUGAGCGCGuucAGCGCg -3'
miRNA:   3'- -UGUUGCAGUACuuGCUCGCGU---UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 59111 0.86 0.215199
Target:  5'- gACGGCGUCGcUGGcCGAcGCGCAAGCGCa -3'
miRNA:   3'- -UGUUGCAGU-ACUuGCU-CGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 72551 0.81 0.412731
Target:  5'- aACAACGggcgcuGCGGGCGCGGGCGCg -3'
miRNA:   3'- -UGUUGCaguacuUGCUCGCGUUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 95381 0.78 0.530046
Target:  5'- aACGGCGUCGUGuccaauuCGAGcCGC-AGCGCg -3'
miRNA:   3'- -UGUUGCAGUACuu-----GCUC-GCGuUCGCG- -5'
6984 5' -50.7 NC_001875.2 + 16912 0.77 0.571937
Target:  5'- gACGACGgcgcgggccUCGUGuuUGAGCGCAucGGCGCg -3'
miRNA:   3'- -UGUUGC---------AGUACuuGCUCGCGU--UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 69705 0.77 0.582544
Target:  5'- -uGACGUCAUGGACGcGCGUc-GCGCu -3'
miRNA:   3'- ugUUGCAGUACUUGCuCGCGuuCGCG- -5'
6984 5' -50.7 NC_001875.2 + 54721 0.76 0.664908
Target:  5'- gGCGACGggCGUGGacagguagccguGCGGGCGCAccgccggcaccgccAGCGCa -3'
miRNA:   3'- -UGUUGCa-GUACU------------UGCUCGCGU--------------UCGCG- -5'
6984 5' -50.7 NC_001875.2 + 47607 0.76 0.66811
Target:  5'- uACAGCGaCAuuuuccUGGACGAGCGC--GCGCg -3'
miRNA:   3'- -UGUUGCaGU------ACUUGCUCGCGuuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.