miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 3' -56.2 NC_001875.2 + 78876 0.67 0.821231
Target:  5'- --aGCUGGCGUGGUUaaaguugGUGUaGCGCUUg -3'
miRNA:   3'- cugUGGCCGCAUCGG-------UACAaCGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 131180 0.67 0.813301
Target:  5'- cGCAccCCGGCGUGuuuGCaguuUAUGUUGgCGCUCa -3'
miRNA:   3'- cUGU--GGCCGCAU---CG----GUACAAC-GCGAG- -5'
6985 3' -56.2 NC_001875.2 + 41024 0.67 0.813301
Target:  5'- -uCGCCaaccGCGUGGCCGUGgacgGCGUUUu -3'
miRNA:   3'- cuGUGGc---CGCAUCGGUACaa--CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 40222 0.67 0.804327
Target:  5'- uGGCGCCGGCGaaacGCgCGUGUUuagcGUGCUg -3'
miRNA:   3'- -CUGUGGCCGCau--CG-GUACAA----CGCGAg -5'
6985 3' -56.2 NC_001875.2 + 31041 0.67 0.804327
Target:  5'- cGAC-CCGGCGcGGCCGUacGUcggacaacugUGcCGCUCa -3'
miRNA:   3'- -CUGuGGCCGCaUCGGUA--CA----------AC-GCGAG- -5'
6985 3' -56.2 NC_001875.2 + 31687 0.67 0.804327
Target:  5'- --uGCCGGCGUGGaCCGccgcUUGCGCg- -3'
miRNA:   3'- cugUGGCCGCAUC-GGUac--AACGCGag -5'
6985 3' -56.2 NC_001875.2 + 128017 0.67 0.804327
Target:  5'- cGCGCCGGCGUgcgccgacgacGGCCGgugGUcGaCGCUg -3'
miRNA:   3'- cUGUGGCCGCA-----------UCGGUa--CAaC-GCGAg -5'
6985 3' -56.2 NC_001875.2 + 23584 0.67 0.785903
Target:  5'- gGGCACCGcGUGcuUGGCCAgcagcccGUUgacGCGCUCg -3'
miRNA:   3'- -CUGUGGC-CGC--AUCGGUa------CAA---CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 81670 0.67 0.785903
Target:  5'- aACGCCGGCGacgaagaggcGGCCAUGcagaagGCGCg- -3'
miRNA:   3'- cUGUGGCCGCa---------UCGGUACaa----CGCGag -5'
6985 3' -56.2 NC_001875.2 + 100606 0.67 0.77647
Target:  5'- gGGCGCCGGcCGcGGCCGcUGuUUGC-CUCg -3'
miRNA:   3'- -CUGUGGCC-GCaUCGGU-AC-AACGcGAG- -5'
6985 3' -56.2 NC_001875.2 + 3549 0.67 0.77647
Target:  5'- -uCACCGGC---GCCGUGgcGCGuCUCa -3'
miRNA:   3'- cuGUGGCCGcauCGGUACaaCGC-GAG- -5'
6985 3' -56.2 NC_001875.2 + 4865 0.68 0.766904
Target:  5'- gGGCAuCCGuuGUGGUUAUGacacgUGCGCUCg -3'
miRNA:   3'- -CUGU-GGCcgCAUCGGUACa----ACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 119680 0.68 0.766904
Target:  5'- cACAgCGGCuucAGCCGaaagcgcugGUUGCGCUCg -3'
miRNA:   3'- cUGUgGCCGca-UCGGUa--------CAACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 120745 0.68 0.747406
Target:  5'- cGGCGCCGaGaCGgGGCCGUGUccaggGCGCg- -3'
miRNA:   3'- -CUGUGGC-C-GCaUCGGUACAa----CGCGag -5'
6985 3' -56.2 NC_001875.2 + 92771 0.68 0.747406
Target:  5'- cGACGCCgcGGCGcacaaUGGCCA---UGCGCUUg -3'
miRNA:   3'- -CUGUGG--CCGC-----AUCGGUacaACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 63742 0.68 0.737494
Target:  5'- -uCGCCGGCGUcGCuCAUGUUaaaUGCUCu -3'
miRNA:   3'- cuGUGGCCGCAuCG-GUACAAc--GCGAG- -5'
6985 3' -56.2 NC_001875.2 + 44484 0.68 0.737494
Target:  5'- uGCACCGGCGcgaccaGGCCGaacUGUUGCaaCUCu -3'
miRNA:   3'- cUGUGGCCGCa-----UCGGU---ACAACGc-GAG- -5'
6985 3' -56.2 NC_001875.2 + 124294 0.68 0.737494
Target:  5'- -cCGCCGGCGUcaGGUC--GUUGCGCa- -3'
miRNA:   3'- cuGUGGCCGCA--UCGGuaCAACGCGag -5'
6985 3' -56.2 NC_001875.2 + 119047 0.68 0.737494
Target:  5'- aGACugguCCGGCGU-GCgCAUG-UGCGCg- -3'
miRNA:   3'- -CUGu---GGCCGCAuCG-GUACaACGCGag -5'
6985 3' -56.2 NC_001875.2 + 106502 0.68 0.736497
Target:  5'- -uCGCCGGUGUAGCCcgcgucgAUGaUGCcCUCg -3'
miRNA:   3'- cuGUGGCCGCAUCGG-------UACaACGcGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.