miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 5' -55.6 NC_001875.2 + 17324 0.66 0.896747
Target:  5'- -aGAGCuGCUGGCgGuUGCGC-CGCCGc -3'
miRNA:   3'- caCUCG-CGAUUGgC-AUGUGcGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 32885 0.66 0.896747
Target:  5'- cUGcAGCGCUGcaaacgGCUGaACACGCGCgCGu -3'
miRNA:   3'- cAC-UCGCGAU------UGGCaUGUGCGCG-GCu -5'
6985 5' -55.6 NC_001875.2 + 55320 0.66 0.896747
Target:  5'- aGUGGcGCGC-GACgGUGaugACGCGCCGc -3'
miRNA:   3'- -CACU-CGCGaUUGgCAUg--UGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 122131 0.66 0.896747
Target:  5'- -cGGGCGCggcgcGGCCGgcgcGCACGaCGgCGAg -3'
miRNA:   3'- caCUCGCGa----UUGGCa---UGUGC-GCgGCU- -5'
6985 5' -55.6 NC_001875.2 + 71931 0.66 0.896747
Target:  5'- -cGAGCGCcuUGACCGcgcgcuccGCGCGCaGCCu- -3'
miRNA:   3'- caCUCGCG--AUUGGCa-------UGUGCG-CGGcu -5'
6985 5' -55.6 NC_001875.2 + 92721 0.66 0.896085
Target:  5'- uUGAGCGCgcugcccgccagcUAACCgGUGCagcaGCGCGuuGGc -3'
miRNA:   3'- cACUCGCG-------------AUUGG-CAUG----UGCGCggCU- -5'
6985 5' -55.6 NC_001875.2 + 109923 0.66 0.890025
Target:  5'- ----cCGCuUAGCCaUGCACGCGCCGc -3'
miRNA:   3'- cacucGCG-AUUGGcAUGUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 36594 0.66 0.890025
Target:  5'- aUGcGGCGC-AGCCGcUGCGCGuCGCCc- -3'
miRNA:   3'- cAC-UCGCGaUUGGC-AUGUGC-GCGGcu -5'
6985 5' -55.6 NC_001875.2 + 49853 0.66 0.890025
Target:  5'- uUGcGCGCcGGCCG-GCGCGCcuuGCCGGc -3'
miRNA:   3'- cACuCGCGaUUGGCaUGUGCG---CGGCU- -5'
6985 5' -55.6 NC_001875.2 + 40645 0.66 0.88934
Target:  5'- cUGGGCGC-------GCACGCGCCGGc -3'
miRNA:   3'- cACUCGCGauuggcaUGUGCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 64560 0.66 0.887963
Target:  5'- --uGGUGCUGGCCGgcgACucgugguucaucaaGCGCGCCa- -3'
miRNA:   3'- cacUCGCGAUUGGCa--UG--------------UGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 94238 0.66 0.88588
Target:  5'- -cGAGCaCgccGCCGUGCGgccggccgcggcgcuCGCGCCGGc -3'
miRNA:   3'- caCUCGcGau-UGGCAUGU---------------GCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 97991 0.66 0.88448
Target:  5'- aUGAGCGCUccacuguacgugaucAACgUGUGCGaccacgaaacgaGCGCCGAa -3'
miRNA:   3'- cACUCGCGA---------------UUG-GCAUGUg-----------CGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 52530 0.66 0.883071
Target:  5'- ---cGCGCUcAUCGaaaGCACGCGCCa- -3'
miRNA:   3'- cacuCGCGAuUGGCa--UGUGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 13365 0.66 0.883071
Target:  5'- cGUGcGUGCUAGCCGUuuuccacaGCGCGaCGCa-- -3'
miRNA:   3'- -CACuCGCGAUUGGCA--------UGUGC-GCGgcu -5'
6985 5' -55.6 NC_001875.2 + 101175 0.66 0.883071
Target:  5'- cGUG-GCGCUggUCaauUACGUGCCGGc -3'
miRNA:   3'- -CACuCGCGAuuGGcauGUGCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 113402 0.66 0.883071
Target:  5'- ---cGCGCgccacgcgGACCGcGCcuCGCGCCGAg -3'
miRNA:   3'- cacuCGCGa-------UUGGCaUGu-GCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 30055 0.66 0.883071
Target:  5'- uUGcuUGCcGGCCGUuuGCACGuCGCCGAa -3'
miRNA:   3'- cACucGCGaUUGGCA--UGUGC-GCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 38851 0.66 0.883071
Target:  5'- uUGAGCGCUAcaUGaaaGCGCGCCa- -3'
miRNA:   3'- cACUCGCGAUugGCaugUGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 37016 0.66 0.882363
Target:  5'- aUGcAGCGCacgcugcaauuuaUGGCCGUgcacggcgcguGCACGCGCgCGGa -3'
miRNA:   3'- cAC-UCGCG-------------AUUGGCA-----------UGUGCGCG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.