miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6986 5' -55.1 NC_001875.2 + 5207 0.66 0.931028
Target:  5'- aGUGGGGCGAUAA---CGCUGauGGCc -3'
miRNA:   3'- aCACUCUGCUGUUucaGCGGCggCCG- -5'
6986 5' -55.1 NC_001875.2 + 63720 0.66 0.92573
Target:  5'- gGUcGcGGCGACGgcGGG-CGCuuCGCCGGCg -3'
miRNA:   3'- aCA-CuCUGCUGU--UUCaGCG--GCGGCCG- -5'
6986 5' -55.1 NC_001875.2 + 31230 0.66 0.92573
Target:  5'- --cGAGGCaaACAGcGGcCGCgGCCGGCg -3'
miRNA:   3'- acaCUCUGc-UGUU-UCaGCGgCGGCCG- -5'
6986 5' -55.1 NC_001875.2 + 88886 0.66 0.92573
Target:  5'- gGUGAugcGCGACAAGaUCGUCaaGCUGGCc -3'
miRNA:   3'- aCACUc--UGCUGUUUcAGCGG--CGGCCG- -5'
6986 5' -55.1 NC_001875.2 + 16071 0.66 0.92573
Target:  5'- cUGUG-GACGcACAcGG-CGCCGguuUCGGCg -3'
miRNA:   3'- -ACACuCUGC-UGUuUCaGCGGC---GGCCG- -5'
6986 5' -55.1 NC_001875.2 + 82204 0.66 0.92573
Target:  5'- ----cGGCGGCcgcucguGUCGCCGCUGGa -3'
miRNA:   3'- acacuCUGCUGuuu----CAGCGGCGGCCg -5'
6986 5' -55.1 NC_001875.2 + 68562 0.66 0.925186
Target:  5'- --cGGcGGCGGCGGucgcgcaccgcguGG-CGCCGCUGGCc -3'
miRNA:   3'- acaCU-CUGCUGUU-------------UCaGCGGCGGCCG- -5'
6986 5' -55.1 NC_001875.2 + 83453 0.66 0.920187
Target:  5'- --cGAGcCGGCAccuGUCGCCGCguCGGa -3'
miRNA:   3'- acaCUCuGCUGUuu-CAGCGGCG--GCCg -5'
6986 5' -55.1 NC_001875.2 + 81810 0.66 0.920187
Target:  5'- --cGGGcCGGCcgccUCGCCGCCcGGCg -3'
miRNA:   3'- acaCUCuGCUGuuucAGCGGCGG-CCG- -5'
6986 5' -55.1 NC_001875.2 + 29789 0.66 0.920187
Target:  5'- --cGGGugGACGGgcguGUCagGCuaCGCCGGCg -3'
miRNA:   3'- acaCUCugCUGUUu---CAG--CG--GCGGCCG- -5'
6986 5' -55.1 NC_001875.2 + 16235 0.66 0.920187
Target:  5'- gUGUGAcugcGGCGACGAGGcCGUcaCGCgCGuGCg -3'
miRNA:   3'- -ACACU----CUGCUGUUUCaGCG--GCG-GC-CG- -5'
6986 5' -55.1 NC_001875.2 + 48492 0.66 0.920187
Target:  5'- uUGUGAGcGCGuuAAuggacuauuuuGGcgCGCCGCCcGGCg -3'
miRNA:   3'- -ACACUC-UGCugUU-----------UCa-GCGGCGG-CCG- -5'
6986 5' -55.1 NC_001875.2 + 33443 0.66 0.914403
Target:  5'- cGUGAGcGCGuuc-AG-CGCgGCCGGCc -3'
miRNA:   3'- aCACUC-UGCuguuUCaGCGgCGGCCG- -5'
6986 5' -55.1 NC_001875.2 + 45120 0.66 0.914403
Target:  5'- aUGUGcGACGAgCAGuGUCgGCCgGgCGGCa -3'
miRNA:   3'- -ACACuCUGCU-GUUuCAG-CGG-CgGCCG- -5'
6986 5' -55.1 NC_001875.2 + 85758 0.66 0.914403
Target:  5'- uUGUG-GGCcACAAuGUCGucguaCCGUCGGCg -3'
miRNA:   3'- -ACACuCUGcUGUUuCAGC-----GGCGGCCG- -5'
6986 5' -55.1 NC_001875.2 + 45961 0.66 0.914403
Target:  5'- ---uAGGCGauagcGCAGAGcCGCCGCugCGGCg -3'
miRNA:   3'- acacUCUGC-----UGUUUCaGCGGCG--GCCG- -5'
6986 5' -55.1 NC_001875.2 + 63634 0.66 0.908376
Target:  5'- -uUGcGGACGACGAGGgaaCGCUGuuGGa -3'
miRNA:   3'- acAC-UCUGCUGUUUCa--GCGGCggCCg -5'
6986 5' -55.1 NC_001875.2 + 111872 0.66 0.908376
Target:  5'- cGUcAGcaACGGCGAGG-CGCCGgCCGGa -3'
miRNA:   3'- aCAcUC--UGCUGUUUCaGCGGC-GGCCg -5'
6986 5' -55.1 NC_001875.2 + 114488 0.66 0.908376
Target:  5'- aUGUGcGGCagcacucuGACGcGGUCGCgCGgCGGCg -3'
miRNA:   3'- -ACACuCUG--------CUGUuUCAGCG-GCgGCCG- -5'
6986 5' -55.1 NC_001875.2 + 62348 0.66 0.90776
Target:  5'- aGUGGGcGCGGCGccaguuuGGGUCGCgCGCCa-- -3'
miRNA:   3'- aCACUC-UGCUGU-------UUCAGCG-GCGGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.