miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6987 3' -56.5 NC_001875.2 + 96807 1.08 0.002153
Target:  5'- cACAAUGCCCAGCGCCGUCAAGCUGGAc -3'
miRNA:   3'- -UGUUACGGGUCGCGGCAGUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 89245 0.8 0.18222
Target:  5'- gGCGGUGCCCAGCGCCG---AGCUGa- -3'
miRNA:   3'- -UGUUACGGGUCGCGGCaguUCGACcu -5'
6987 3' -56.5 NC_001875.2 + 3869 0.74 0.401122
Target:  5'- gGCAcgGCagcaCcGCGCCGcCAAGCUGGGc -3'
miRNA:   3'- -UGUuaCGg---GuCGCGGCaGUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 36416 0.73 0.427769
Target:  5'- cACGcUGgCCGGCGCCGcggugUCGGGCUGGu -3'
miRNA:   3'- -UGUuACgGGUCGCGGC-----AGUUCGACCu -5'
6987 3' -56.5 NC_001875.2 + 74783 0.73 0.436881
Target:  5'- uACAAaugguUGCCCA---CCGUCGAGCUGGAg -3'
miRNA:   3'- -UGUU-----ACGGGUcgcGGCAGUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 63859 0.73 0.446104
Target:  5'- -aGGUGUCCGGCGCCuguUCAGGCUGa- -3'
miRNA:   3'- ugUUACGGGUCGCGGc--AGUUCGACcu -5'
6987 3' -56.5 NC_001875.2 + 85724 0.72 0.503576
Target:  5'- ---uUGCCCAGCGUgGUCAAaCUGGc -3'
miRNA:   3'- uguuACGGGUCGCGgCAGUUcGACCu -5'
6987 3' -56.5 NC_001875.2 + 72158 0.71 0.539562
Target:  5'- aACGAguUGUCCGGCGCgGgcucggcuucaagCAAGCUGGGc -3'
miRNA:   3'- -UGUU--ACGGGUCGCGgCa------------GUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 45726 0.7 0.584644
Target:  5'- -gGGUGCUC--CGCCGcCGAGCUGGAa -3'
miRNA:   3'- ugUUACGGGucGCGGCaGUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 31594 0.7 0.595007
Target:  5'- -uGGUGUCCGGCGCCGUgccgUggGC-GGAc -3'
miRNA:   3'- ugUUACGGGUCGCGGCA----GuuCGaCCU- -5'
6987 3' -56.5 NC_001875.2 + 95305 0.7 0.61581
Target:  5'- gACGGUGCgcgCCAGCGCCGUUuGGCg--- -3'
miRNA:   3'- -UGUUACG---GGUCGCGGCAGuUCGaccu -5'
6987 3' -56.5 NC_001875.2 + 7882 0.69 0.678257
Target:  5'- aACAAgcGCCgCGGCaGuUUGUCAAGCUGGAg -3'
miRNA:   3'- -UGUUa-CGG-GUCG-C-GGCAGUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 70858 0.69 0.678257
Target:  5'- uGCGGUGCgCCAGCGCCGacccgcuuUCGAGaacaaucguuCUGGu -3'
miRNA:   3'- -UGUUACG-GGUCGCGGC--------AGUUC----------GACCu -5'
6987 3' -56.5 NC_001875.2 + 104670 0.69 0.685487
Target:  5'- gACGGUGCUuagucgcagcuacgCAGCGgCGacCAAGCUGGAc -3'
miRNA:   3'- -UGUUACGG--------------GUCGCgGCa-GUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 13091 0.69 0.698854
Target:  5'- aGCAGgccGCCCAccauGUGCCG-C-AGCUGGAu -3'
miRNA:   3'- -UGUUa--CGGGU----CGCGGCaGuUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 114933 0.68 0.70907
Target:  5'- cACGAgGCCC-GCGCCGUCGucgaUGGGc -3'
miRNA:   3'- -UGUUaCGGGuCGCGGCAGUucg-ACCU- -5'
6987 3' -56.5 NC_001875.2 + 73216 0.68 0.70907
Target:  5'- uGCAGcGCCuCAGCacugGCCGUCAGGCUu-- -3'
miRNA:   3'- -UGUUaCGG-GUCG----CGGCAGUUCGAccu -5'
6987 3' -56.5 NC_001875.2 + 87814 0.68 0.719218
Target:  5'- cGCGAUGCCgGGCuGCgGUaCAGcacGCUGGGc -3'
miRNA:   3'- -UGUUACGGgUCG-CGgCA-GUU---CGACCU- -5'
6987 3' -56.5 NC_001875.2 + 38516 0.68 0.739272
Target:  5'- aGCAAaccUGCUgAGCGCuCGgcCGAGCUGGu -3'
miRNA:   3'- -UGUU---ACGGgUCGCG-GCa-GUUCGACCu -5'
6987 3' -56.5 NC_001875.2 + 119063 0.68 0.739272
Target:  5'- cGCAuGUGCgCGGCGCCcc--GGCUGGAc -3'
miRNA:   3'- -UGU-UACGgGUCGCGGcaguUCGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.