Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 95305 | 0.7 | 0.61581 |
Target: 5'- gACGGUGCgcgCCAGCGCCGUUuGGCg--- -3' miRNA: 3'- -UGUUACG---GGUCGCGGCAGuUCGaccu -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 31594 | 0.7 | 0.595007 |
Target: 5'- -uGGUGUCCGGCGCCGUgccgUggGC-GGAc -3' miRNA: 3'- ugUUACGGGUCGCGGCA----GuuCGaCCU- -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 45726 | 0.7 | 0.584644 |
Target: 5'- -gGGUGCUC--CGCCGcCGAGCUGGAa -3' miRNA: 3'- ugUUACGGGucGCGGCaGUUCGACCU- -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 72158 | 0.71 | 0.539562 |
Target: 5'- aACGAguUGUCCGGCGCgGgcucggcuucaagCAAGCUGGGc -3' miRNA: 3'- -UGUU--ACGGGUCGCGgCa------------GUUCGACCU- -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 85724 | 0.72 | 0.503576 |
Target: 5'- ---uUGCCCAGCGUgGUCAAaCUGGc -3' miRNA: 3'- uguuACGGGUCGCGgCAGUUcGACCu -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 63859 | 0.73 | 0.446104 |
Target: 5'- -aGGUGUCCGGCGCCuguUCAGGCUGa- -3' miRNA: 3'- ugUUACGGGUCGCGGc--AGUUCGACcu -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 74783 | 0.73 | 0.436881 |
Target: 5'- uACAAaugguUGCCCA---CCGUCGAGCUGGAg -3' miRNA: 3'- -UGUU-----ACGGGUcgcGGCAGUUCGACCU- -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 36416 | 0.73 | 0.427769 |
Target: 5'- cACGcUGgCCGGCGCCGcggugUCGGGCUGGu -3' miRNA: 3'- -UGUuACgGGUCGCGGC-----AGUUCGACCu -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 3869 | 0.74 | 0.401122 |
Target: 5'- gGCAcgGCagcaCcGCGCCGcCAAGCUGGGc -3' miRNA: 3'- -UGUuaCGg---GuCGCGGCaGUUCGACCU- -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 89245 | 0.8 | 0.18222 |
Target: 5'- gGCGGUGCCCAGCGCCG---AGCUGa- -3' miRNA: 3'- -UGUUACGGGUCGCGGCaguUCGACcu -5' |
|||||||
6987 | 3' | -56.5 | NC_001875.2 | + | 96807 | 1.08 | 0.002153 |
Target: 5'- cACAAUGCCCAGCGCCGUCAAGCUGGAc -3' miRNA: 3'- -UGUUACGGGUCGCGGCAGUUCGACCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home