miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6987 5' -55.9 NC_001875.2 + 46439 0.66 0.841797
Target:  5'- gGCCUU-UUUGguuACGGUG-GCGCGCAAa -3'
miRNA:   3'- gCGGAAcAAAC---UGCCGCgCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 98006 0.66 0.841797
Target:  5'- aCGUgUUGUUUGACgaGGCGUuuuucccccGCGCGCc- -3'
miRNA:   3'- -GCGgAACAAACUG--CCGCG---------CGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 68610 0.66 0.841797
Target:  5'- aCGCgUUUGUggUGACgGGCGaCGCGgGCGAc -3'
miRNA:   3'- -GCG-GAACAa-ACUG-CCGC-GCGCgUGUU- -5'
6987 5' -55.9 NC_001875.2 + 91188 0.66 0.838461
Target:  5'- uCGCCgcgcaacaGcCGGCGCGUGCGCGc -3'
miRNA:   3'- -GCGGaacaaa--CuGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 741 0.67 0.836782
Target:  5'- uGCCagguaccaacuuuuUUGUUgcacauggggcagcUGACGGCG-GCGCGCGGa -3'
miRNA:   3'- gCGG--------------AACAA--------------ACUGCCGCgCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 79120 0.67 0.833399
Target:  5'- gGCgUUGUc-GGCGGCGgGCGcCGCGg -3'
miRNA:   3'- gCGgAACAaaCUGCCGCgCGC-GUGUu -5'
6987 5' -55.9 NC_001875.2 + 38772 0.67 0.833399
Target:  5'- gCGUCcUGUUgGGCGGagaGCGCGCccGCAAu -3'
miRNA:   3'- -GCGGaACAAaCUGCCg--CGCGCG--UGUU- -5'
6987 5' -55.9 NC_001875.2 + 34408 0.67 0.833399
Target:  5'- uGCaagUGgaaaacGACGGCGCGuUGCGCAAa -3'
miRNA:   3'- gCGga-ACaaa---CUGCCGCGC-GCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 18141 0.67 0.833399
Target:  5'- aCGCCacUGUgaguuacUGguGCGGCGCGCGCgACGc -3'
miRNA:   3'- -GCGGa-ACAa------AC--UGCCGCGCGCG-UGUu -5'
6987 5' -55.9 NC_001875.2 + 77943 0.67 0.833399
Target:  5'- gCGCCcacaaUUaUUUGcgccGCGGCgGCGCGCACGAc -3'
miRNA:   3'- -GCGG-----AAcAAAC----UGCCG-CGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 88869 0.67 0.833399
Target:  5'- cCGCCUUucaaagcaUUGuuGGCGCGCuGCGCGGg -3'
miRNA:   3'- -GCGGAAca------AACugCCGCGCG-CGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 131681 0.67 0.832548
Target:  5'- aGCCacgUGUUUGGCGcCGCGUGCcugccuuGCAGu -3'
miRNA:   3'- gCGGa--ACAAACUGCcGCGCGCG-------UGUU- -5'
6987 5' -55.9 NC_001875.2 + 86131 0.67 0.824809
Target:  5'- gGCCaucGgcagUGcGCGGCGCGCGCgGCGAg -3'
miRNA:   3'- gCGGaa-Caa--AC-UGCCGCGCGCG-UGUU- -5'
6987 5' -55.9 NC_001875.2 + 50543 0.67 0.824809
Target:  5'- gCGCCgcc---GGCGGCGCGCGUg--- -3'
miRNA:   3'- -GCGGaacaaaCUGCCGCGCGCGuguu -5'
6987 5' -55.9 NC_001875.2 + 111769 0.67 0.824809
Target:  5'- gCGCCgacgacuggUGUcgcuggUGACGGCG-GUGCACGc -3'
miRNA:   3'- -GCGGa--------ACAa-----ACUGCCGCgCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 122462 0.67 0.824809
Target:  5'- uGCaagUUGgcUG-CGGCGCGCGCAgCAc -3'
miRNA:   3'- gCGg--AACaaACuGCCGCGCGCGU-GUu -5'
6987 5' -55.9 NC_001875.2 + 100255 0.67 0.824809
Target:  5'- uCGCUaUUGU--GugGGCG-GCGCGCAAg -3'
miRNA:   3'- -GCGG-AACAaaCugCCGCgCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 45632 0.67 0.816036
Target:  5'- aGCCgcaagUUGUgcGGCGGCGCcucuaguuuuGCGUACAGc -3'
miRNA:   3'- gCGG-----AACAaaCUGCCGCG----------CGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 38227 0.67 0.816036
Target:  5'- aCGUCagGUUUGACGaggcggaaGCGCGCGUcuACAAc -3'
miRNA:   3'- -GCGGaaCAAACUGC--------CGCGCGCG--UGUU- -5'
6987 5' -55.9 NC_001875.2 + 124887 0.67 0.816036
Target:  5'- gCGCCgUGgcgaUGucGCGGCGCaCGCACGAc -3'
miRNA:   3'- -GCGGaACaa--AC--UGCCGCGcGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.