miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 3' -55.6 NC_001875.2 + 67262 0.67 0.81313
Target:  5'- gAAGGUGGCGCGCuugaugaaccACGAGUcGCCGg--- -3'
miRNA:   3'- -UUCCGUUGCGCG----------UGCUCA-CGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 65086 0.67 0.803961
Target:  5'- uGGGCAaggACGCGCucaACGAGgcgGCCaaGCAGc -3'
miRNA:   3'- uUCCGU---UGCGCG---UGCUCa--CGG--UGUUu -5'
6988 3' -55.6 NC_001875.2 + 72565 0.67 0.803961
Target:  5'- cGGGC-GCGgGCGCGGGcGCUGCGGGu -3'
miRNA:   3'- uUCCGuUGCgCGUGCUCaCGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 77038 0.67 0.794623
Target:  5'- -cGGCAGcCGCGuCGCGgugcuAGUGCCGCc-- -3'
miRNA:   3'- uuCCGUU-GCGC-GUGC-----UCACGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 63136 0.67 0.794623
Target:  5'- cGGGCGcgcgGCcgGCGCACGGGU-CCACGGg -3'
miRNA:   3'- uUCCGU----UG--CGCGUGCUCAcGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 113683 0.67 0.794623
Target:  5'- -uGGCGGCGuCGCGCGc--GCCGCAc- -3'
miRNA:   3'- uuCCGUUGC-GCGUGCucaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 114549 0.67 0.79368
Target:  5'- -cGGCGGCGCuCACGAcgcuccaGUGCgGCGGAu -3'
miRNA:   3'- uuCCGUUGCGcGUGCU-------CACGgUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 92607 0.67 0.785126
Target:  5'- --aGCAuGCGCGCGCGAaUGCCGgAAAa -3'
miRNA:   3'- uucCGU-UGCGCGUGCUcACGGUgUUU- -5'
6988 3' -55.6 NC_001875.2 + 42745 0.67 0.785126
Target:  5'- -cGGCGACGCGCAUGGuGaGCgGCGc- -3'
miRNA:   3'- uuCCGUUGCGCGUGCU-CaCGgUGUuu -5'
6988 3' -55.6 NC_001875.2 + 65778 0.67 0.785126
Target:  5'- uGGGCGagcACGCGCGCGgcgucggcgcgcGGUGCCuGCGc- -3'
miRNA:   3'- uUCCGU---UGCGCGUGC------------UCACGG-UGUuu -5'
6988 3' -55.6 NC_001875.2 + 5919 0.67 0.785126
Target:  5'- -cGGCAugGCGUugGguAGcGCCGCGc- -3'
miRNA:   3'- uuCCGUugCGCGugC--UCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 105068 0.67 0.785126
Target:  5'- -cGGC-GCGuCGCucaACGAGUGCUACGGc -3'
miRNA:   3'- uuCCGuUGC-GCG---UGCUCACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 48107 0.67 0.785126
Target:  5'- uGGGCAcaaACGCGUacaACGAGUGaaACAGGu -3'
miRNA:   3'- uUCCGU---UGCGCG---UGCUCACggUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 37048 0.67 0.785126
Target:  5'- -cGGCGcgugcACGCGCGCGGacgcgGCCACGc- -3'
miRNA:   3'- uuCCGU-----UGCGCGUGCUca---CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 39324 0.67 0.77548
Target:  5'- -cGGCGGCGUGCGCGc--GCUGCAGg -3'
miRNA:   3'- uuCCGUUGCGCGUGCucaCGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 68625 0.67 0.77548
Target:  5'- cGGGCGACGCGgGCGAcGUaaaGCUGCGc- -3'
miRNA:   3'- uUCCGUUGCGCgUGCU-CA---CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 130114 0.67 0.77548
Target:  5'- -cGGCGGCG-GCGCGAccgGUGUCGCGc- -3'
miRNA:   3'- uuCCGUUGCgCGUGCU---CACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 18018 0.67 0.774508
Target:  5'- uGGGGCGcuACGCGCGCGAcauugacGUGCaauGCGAc -3'
miRNA:   3'- -UUCCGU--UGCGCGUGCU-------CACGg--UGUUu -5'
6988 3' -55.6 NC_001875.2 + 114684 0.67 0.765696
Target:  5'- -cGGCGAcCGUGCuuuuCGGGUGCCAa--- -3'
miRNA:   3'- uuCCGUU-GCGCGu---GCUCACGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 102543 0.67 0.765696
Target:  5'- ---aCAACGCGCACGAcacGCCACAc- -3'
miRNA:   3'- uuccGUUGCGCGUGCUca-CGGUGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.