Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6988 | 5' | -56.2 | NC_001875.2 | + | 20793 | 0.7 | 0.67564 |
Target: 5'- aGCCGUc-GACGCGCaguGCGCGGGCg--- -3' miRNA: 3'- -CGGCAcaCUGUGCG---UGCGCCUGacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 21502 | 0.72 | 0.562637 |
Target: 5'- gGCUGUGcuACACGCACGCccauuGGCUGUGg -3' miRNA: 3'- -CGGCACacUGUGCGUGCGc----CUGACAU- -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 21580 | 0.7 | 0.67564 |
Target: 5'- -gCGUG-GACGCGUACGUGGACc--- -3' miRNA: 3'- cgGCACaCUGUGCGUGCGCCUGacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 27190 | 0.66 | 0.875928 |
Target: 5'- aCCGUcagGUGGCACGCGCuaGGAUcGg- -3' miRNA: 3'- cGGCA---CACUGUGCGUGcgCCUGaCau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 31840 | 0.67 | 0.836968 |
Target: 5'- cGCUGUuuuuguuUGACAacuuuaaauCGCGCGUGGACUGg- -3' miRNA: 3'- -CGGCAc------ACUGU---------GCGUGCGCCUGACau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 31977 | 0.66 | 0.890004 |
Target: 5'- -gCGUGUGGCGCGCguACGgcCGGuuUGUGa -3' miRNA: 3'- cgGCACACUGUGCG--UGC--GCCugACAU- -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 33211 | 0.66 | 0.883079 |
Target: 5'- uGCCGgcaaACGCGgGCGCGGGCUc-- -3' miRNA: 3'- -CGGCacacUGUGCgUGCGCCUGAcau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 33461 | 0.66 | 0.87153 |
Target: 5'- gGCCGgccaguggucgaaaGUGGCGCGC-CGCGcGCUGg- -3' miRNA: 3'- -CGGCa-------------CACUGUGCGuGCGCcUGACau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 36561 | 0.69 | 0.726216 |
Target: 5'- cCCGUGUGcAUaccgACGCACGCGGcgaGCUuGUAu -3' miRNA: 3'- cGGCACAC-UG----UGCGUGCGCC---UGA-CAU- -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 37039 | 0.75 | 0.392952 |
Target: 5'- gGCCGUgcacggcgcGUG-CACGCGCGCGGACg--- -3' miRNA: 3'- -CGGCA---------CACuGUGCGUGCGCCUGacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 40042 | 0.66 | 0.860967 |
Target: 5'- cGUCGUGUacguuccCACGgACGCGGACgUGUu -3' miRNA: 3'- -CGGCACAcu-----GUGCgUGCGCCUG-ACAu -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 40638 | 0.66 | 0.875928 |
Target: 5'- aGCUcaacUG-GGCGCGCACGCGccGGCUGUu -3' miRNA: 3'- -CGGc---ACaCUGUGCGUGCGC--CUGACAu -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 41597 | 0.68 | 0.774729 |
Target: 5'- cGCCGaa-GGCGCGgGCGCGGGCg--- -3' miRNA: 3'- -CGGCacaCUGUGCgUGCGCCUGacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 51965 | 0.66 | 0.883079 |
Target: 5'- uGCCGcac-GCGCGCGCGUGGACc--- -3' miRNA: 3'- -CGGCacacUGUGCGUGCGCCUGacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 59636 | 0.7 | 0.655092 |
Target: 5'- cGCCGcGUcGCugGCuCGUGGGCUGUu -3' miRNA: 3'- -CGGCaCAcUGugCGuGCGCCUGACAu -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 61894 | 0.68 | 0.784081 |
Target: 5'- cGCCGUGgcccGACACGCGCcgugucacgGCGGAa---- -3' miRNA: 3'- -CGGCACa---CUGUGCGUG---------CGCCUgacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 70320 | 0.68 | 0.765248 |
Target: 5'- gGCCGccaaGCGCgaGCACGCGGACUGc- -3' miRNA: 3'- -CGGCacacUGUG--CGUGCGCCUGACau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 72560 | 0.66 | 0.860967 |
Target: 5'- cGCUGcG-GGCGCGgGCGCGGGCg--- -3' miRNA: 3'- -CGGCaCaCUGUGCgUGCGCCUGacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 75374 | 0.66 | 0.860967 |
Target: 5'- cGCUGaccaACACGCGCGCGGACc--- -3' miRNA: 3'- -CGGCacacUGUGCGUGCGCCUGacau -5' |
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6988 | 5' | -56.2 | NC_001875.2 | + | 77255 | 0.71 | 0.624152 |
Target: 5'- cGCCGUG-GGCGCGC-CGcCGGGCg--- -3' miRNA: 3'- -CGGCACaCUGUGCGuGC-GCCUGacau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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