miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6989 3' -52.3 NC_001875.2 + 59622 0.66 0.967562
Target:  5'- gGCGGauuGGCGGACGccGCGUCGCUg-- -3'
miRNA:   3'- -UGCCg--UUGCUUGUuuCGCGGUGGuaa -5'
6989 3' -52.3 NC_001875.2 + 37355 0.66 0.967562
Target:  5'- cGCGGCcgcgcgcucguGCGAACGcgcGCGCCGCUg-- -3'
miRNA:   3'- -UGCCGu----------UGCUUGUuu-CGCGGUGGuaa -5'
6989 3' -52.3 NC_001875.2 + 91107 0.66 0.967562
Target:  5'- uUGGCAAUGuGCAGcAGCGUCugCGc- -3'
miRNA:   3'- uGCCGUUGCuUGUU-UCGCGGugGUaa -5'
6989 3' -52.3 NC_001875.2 + 54182 0.66 0.967562
Target:  5'- aGCGGCGcuGCGuu---GGCGuCCACCAg- -3'
miRNA:   3'- -UGCCGU--UGCuuguuUCGC-GGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 33145 0.66 0.967562
Target:  5'- gGCGGCAgggcaacagcACG-GCGucGCGCUGCCGc- -3'
miRNA:   3'- -UGCCGU----------UGCuUGUuuCGCGGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 102158 0.66 0.967562
Target:  5'- uCGcGCAucACGAGCAauAAGCGUUAUCAUUu -3'
miRNA:   3'- uGC-CGU--UGCUUGU--UUCGCGGUGGUAA- -5'
6989 3' -52.3 NC_001875.2 + 72535 0.66 0.967562
Target:  5'- cAUGGCAACGGaauuaaACAAcgGGCGCUGCgGg- -3'
miRNA:   3'- -UGCCGUUGCU------UGUU--UCGCGGUGgUaa -5'
6989 3' -52.3 NC_001875.2 + 121671 0.66 0.967562
Target:  5'- gGCGGUGACGGugGucucGUcgGCCACCAc- -3'
miRNA:   3'- -UGCCGUUGCUugUuu--CG--CGGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 13025 0.66 0.965566
Target:  5'- cGCGGCAgcuuugcaaaaaGCGcGCAAAuaagcgcuuugggucGCGCCACCc-- -3'
miRNA:   3'- -UGCCGU------------UGCuUGUUU---------------CGCGGUGGuaa -5'
6989 3' -52.3 NC_001875.2 + 82677 0.66 0.965566
Target:  5'- uCGGCGAgGuuguCGAgaauuucguccugguAGCGCCGCCAg- -3'
miRNA:   3'- uGCCGUUgCuu--GUU---------------UCGCGGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 105887 0.66 0.964188
Target:  5'- uCGGUgcaguacccgauGGCGGGCGcGGCGgCCACCAc- -3'
miRNA:   3'- uGCCG------------UUGCUUGUuUCGC-GGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 95245 0.66 0.964188
Target:  5'- -gGGCGACGcGCAGcggcuGCGCCGCa--- -3'
miRNA:   3'- ugCCGUUGCuUGUUu----CGCGGUGguaa -5'
6989 3' -52.3 NC_001875.2 + 55717 0.66 0.963837
Target:  5'- uACGGCcGCGcaaauacGGCcGAGCGUgGCCAUg -3'
miRNA:   3'- -UGCCGuUGC-------UUGuUUCGCGgUGGUAa -5'
6989 3' -52.3 NC_001875.2 + 74510 0.66 0.963837
Target:  5'- cGCGcGCAGCGcugccgcAACAAuuGCGUCGCCGa- -3'
miRNA:   3'- -UGC-CGUUGC-------UUGUUu-CGCGGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 49450 0.66 0.960574
Target:  5'- cGCGGCuGACGGugGAcGGCGCCGugGUUc -3'
miRNA:   3'- -UGCCG-UUGCUugUU-UCGCGGUggUAA- -5'
6989 3' -52.3 NC_001875.2 + 14075 0.66 0.960574
Target:  5'- aACGGCGACGggUuuaccGUGCagCACCAg- -3'
miRNA:   3'- -UGCCGUUGCuuGuuu--CGCG--GUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 32423 0.66 0.960574
Target:  5'- cGCGGCGcuggccaacaauGCGcugcGCGAcccgcuGGCGCCGCCGg- -3'
miRNA:   3'- -UGCCGU------------UGCu---UGUU------UCGCGGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 117924 0.66 0.960574
Target:  5'- gACGGCAAgcuGCAGGccggcgugcGCGCCGCCGc- -3'
miRNA:   3'- -UGCCGUUgcuUGUUU---------CGCGGUGGUaa -5'
6989 3' -52.3 NC_001875.2 + 129965 0.66 0.960574
Target:  5'- gGCGGCGGCGGcgGCGGcGGCGgCGgCAUg -3'
miRNA:   3'- -UGCCGUUGCU--UGUU-UCGCgGUgGUAa -5'
6989 3' -52.3 NC_001875.2 + 18161 0.66 0.960574
Target:  5'- uGCGGC-GCGcGCGA--CGCCGCCAc- -3'
miRNA:   3'- -UGCCGuUGCuUGUUucGCGGUGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.