miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6989 5' -47.6 NC_001875.2 + 62396 0.66 0.9997
Target:  5'- uGAGUCGccgcggguuuUAUUGCgugggcaagcgUUUGCGCUGcGCCg -3'
miRNA:   3'- gCUUAGC----------AUAACG-----------AAGCGCGAUcUGG- -5'
6989 5' -47.6 NC_001875.2 + 125839 0.66 0.999602
Target:  5'- uCGGA-CGUGgcccccauucgGCa-CGCGCUGGGCCu -3'
miRNA:   3'- -GCUUaGCAUaa---------CGaaGCGCGAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 30089 0.66 0.999403
Target:  5'- aCGAuUCuuUGUUGCUgugCGCGCUGuacGCCg -3'
miRNA:   3'- -GCUuAGc-AUAACGAa--GCGCGAUc--UGG- -5'
6989 5' -47.6 NC_001875.2 + 65082 0.67 0.999259
Target:  5'- aCGAAUUGUuuugaGCUccuugUCGCGCggcagcauGACCa -3'
miRNA:   3'- -GCUUAGCAuaa--CGA-----AGCGCGau------CUGG- -5'
6989 5' -47.6 NC_001875.2 + 93858 0.67 0.999086
Target:  5'- aCGGuuGUCGgc--GCUgagCGCGC-AGGCCg -3'
miRNA:   3'- -GCU--UAGCauaaCGAa--GCGCGaUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 18053 0.67 0.998634
Target:  5'- aCGAggCGUAcugccgccGCUUCGgGCgcGACCu -3'
miRNA:   3'- -GCUuaGCAUaa------CGAAGCgCGauCUGG- -5'
6989 5' -47.6 NC_001875.2 + 87014 0.67 0.998345
Target:  5'- gCGAGUCGa----UUUCGCGUUGGugCa -3'
miRNA:   3'- -GCUUAGCauaacGAAGCGCGAUCugG- -5'
6989 5' -47.6 NC_001875.2 + 264 0.68 0.998006
Target:  5'- gGggUCGUuguAUUGCUggcgUCGCcgcauGCUGG-CCa -3'
miRNA:   3'- gCuuAGCA---UAACGA----AGCG-----CGAUCuGG- -5'
6989 5' -47.6 NC_001875.2 + 84729 0.68 0.99761
Target:  5'- gGggUCGcgGUUGCgccCGCGCUu--CCa -3'
miRNA:   3'- gCuuAGCa-UAACGaa-GCGCGAucuGG- -5'
6989 5' -47.6 NC_001875.2 + 67450 0.68 0.997151
Target:  5'- ---uUUGUacuuGUUGCUgggCGCGCUGG-CCg -3'
miRNA:   3'- gcuuAGCA----UAACGAa--GCGCGAUCuGG- -5'
6989 5' -47.6 NC_001875.2 + 104963 0.68 0.997151
Target:  5'- ---cUCGUGUgcgGCggCGgGCUGGugCa -3'
miRNA:   3'- gcuuAGCAUAa--CGaaGCgCGAUCugG- -5'
6989 5' -47.6 NC_001875.2 + 23671 0.69 0.995315
Target:  5'- gCGAAUUGUGUUGUUUUGCaaGUUcGACa -3'
miRNA:   3'- -GCUUAGCAUAACGAAGCG--CGAuCUGg -5'
6989 5' -47.6 NC_001875.2 + 54474 0.69 0.995315
Target:  5'- ----gCGUGUgcggcagGaCUUCGCGCUuGACCa -3'
miRNA:   3'- gcuuaGCAUAa------C-GAAGCGCGAuCUGG- -5'
6989 5' -47.6 NC_001875.2 + 81330 0.69 0.995315
Target:  5'- uCGucAUCGUGccGCgcggCGCGCUGGugCc -3'
miRNA:   3'- -GCu-UAGCAUaaCGaa--GCGCGAUCugG- -5'
6989 5' -47.6 NC_001875.2 + 84438 0.69 0.995315
Target:  5'- gCGGAUCGggagcgGCggCgGCGgUAGACCa -3'
miRNA:   3'- -GCUUAGCauaa--CGaaG-CGCgAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 72598 0.69 0.994523
Target:  5'- ---cUCGUAc-GCUUCGCGCUcGGCg -3'
miRNA:   3'- gcuuAGCAUaaCGAAGCGCGAuCUGg -5'
6989 5' -47.6 NC_001875.2 + 49675 0.69 0.994523
Target:  5'- aCGAccug-GUUGCacgaaaCGCGCUGGACCg -3'
miRNA:   3'- -GCUuagcaUAACGaa----GCGCGAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 54871 0.69 0.992615
Target:  5'- uGAA-CGUGUUGU-UCGCGCacUGGGCUc -3'
miRNA:   3'- gCUUaGCAUAACGaAGCGCG--AUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 54973 0.69 0.992615
Target:  5'- gGAcgCGUc--GC-UCGCGCUGGGCg -3'
miRNA:   3'- gCUuaGCAuaaCGaAGCGCGAUCUGg -5'
6989 5' -47.6 NC_001875.2 + 2283 0.7 0.990211
Target:  5'- uGAcGUCGUGaUGCgcgCGCGCcguGGCCg -3'
miRNA:   3'- gCU-UAGCAUaACGaa-GCGCGau-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.