miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6989 5' -47.6 NC_001875.2 + 97710 1.15 0.008011
Target:  5'- gCGAAUCGUAUUGCUUCGCGCUAGACCg -3'
miRNA:   3'- -GCUUAGCAUAACGAAGCGCGAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 62396 0.66 0.9997
Target:  5'- uGAGUCGccgcggguuuUAUUGCgugggcaagcgUUUGCGCUGcGCCg -3'
miRNA:   3'- gCUUAGC----------AUAACG-----------AAGCGCGAUcUGG- -5'
6989 5' -47.6 NC_001875.2 + 30089 0.66 0.999403
Target:  5'- aCGAuUCuuUGUUGCUgugCGCGCUGuacGCCg -3'
miRNA:   3'- -GCUuAGc-AUAACGAa--GCGCGAUc--UGG- -5'
6989 5' -47.6 NC_001875.2 + 65082 0.67 0.999259
Target:  5'- aCGAAUUGUuuugaGCUccuugUCGCGCggcagcauGACCa -3'
miRNA:   3'- -GCUUAGCAuaa--CGA-----AGCGCGau------CUGG- -5'
6989 5' -47.6 NC_001875.2 + 87014 0.67 0.998345
Target:  5'- gCGAGUCGa----UUUCGCGUUGGugCa -3'
miRNA:   3'- -GCUUAGCauaacGAAGCGCGAUCugG- -5'
6989 5' -47.6 NC_001875.2 + 264 0.68 0.998006
Target:  5'- gGggUCGUuguAUUGCUggcgUCGCcgcauGCUGG-CCa -3'
miRNA:   3'- gCuuAGCA---UAACGA----AGCG-----CGAUCuGG- -5'
6989 5' -47.6 NC_001875.2 + 104963 0.68 0.997151
Target:  5'- ---cUCGUGUgcgGCggCGgGCUGGugCa -3'
miRNA:   3'- gcuuAGCAUAa--CGaaGCgCGAUCugG- -5'
6989 5' -47.6 NC_001875.2 + 54474 0.69 0.995315
Target:  5'- ----gCGUGUgcggcagGaCUUCGCGCUuGACCa -3'
miRNA:   3'- gcuuaGCAUAa------C-GAAGCGCGAuCUGG- -5'
6989 5' -47.6 NC_001875.2 + 81330 0.69 0.995315
Target:  5'- uCGucAUCGUGccGCgcggCGCGCUGGugCc -3'
miRNA:   3'- -GCu-UAGCAUaaCGaa--GCGCGAUCugG- -5'
6989 5' -47.6 NC_001875.2 + 84438 0.69 0.995315
Target:  5'- gCGGAUCGggagcgGCggCgGCGgUAGACCa -3'
miRNA:   3'- -GCUUAGCauaa--CGaaG-CGCgAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 89908 0.72 0.97024
Target:  5'- uCGGcgCGUGUUGCUgauuguguucaaauUUGCGCUcaACCg -3'
miRNA:   3'- -GCUuaGCAUAACGA--------------AGCGCGAucUGG- -5'
6989 5' -47.6 NC_001875.2 + 103814 0.7 0.985505
Target:  5'- aGGG-CGU-UUGCggcgCGUGCUGGGCCu -3'
miRNA:   3'- gCUUaGCAuAACGaa--GCGCGAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 19105 0.7 0.987234
Target:  5'- aGGGcCGUGUUGCUgugCGCGCgacgcGCCu -3'
miRNA:   3'- gCUUaGCAUAACGAa--GCGCGauc--UGG- -5'
6989 5' -47.6 NC_001875.2 + 54871 0.69 0.992615
Target:  5'- uGAA-CGUGUUGU-UCGCGCacUGGGCUc -3'
miRNA:   3'- gCUUaGCAUAACGaAGCGCG--AUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 54973 0.69 0.992615
Target:  5'- gGAcgCGUc--GC-UCGCGCUGGGCg -3'
miRNA:   3'- gCUuaGCAuaaCGaAGCGCGAUCUGg -5'
6989 5' -47.6 NC_001875.2 + 49675 0.69 0.994523
Target:  5'- aCGAccug-GUUGCacgaaaCGCGCUGGACCg -3'
miRNA:   3'- -GCUuagcaUAACGaa----GCGCGAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 125839 0.66 0.999602
Target:  5'- uCGGA-CGUGgcccccauucgGCa-CGCGCUGGGCCu -3'
miRNA:   3'- -GCUUaGCAUaa---------CGaaGCGCGAUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 54588 0.77 0.787734
Target:  5'- cCGAAUCGc--UGCUUUGCGCgAGGCUg -3'
miRNA:   3'- -GCUUAGCauaACGAAGCGCGaUCUGG- -5'
6989 5' -47.6 NC_001875.2 + 18117 0.75 0.89731
Target:  5'- gGAGUCGcucaucgGCUUUGUGCUGGGCg -3'
miRNA:   3'- gCUUAGCauaa---CGAAGCGCGAUCUGg -5'
6989 5' -47.6 NC_001875.2 + 2283 0.7 0.990211
Target:  5'- uGAcGUCGUGaUGCgcgCGCGCcguGGCCg -3'
miRNA:   3'- gCU-UAGCAUaACGaa-GCGCGau-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.