miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6990 5' -61 NC_001875.2 + 43313 0.66 0.706576
Target:  5'- -aGCGGcGCGCGc-GCGGGU--CGGCGu -3'
miRNA:   3'- cgUGCC-CGUGCaaCGCCCGcaGCCGC- -5'
6990 5' -61 NC_001875.2 + 33914 0.66 0.706576
Target:  5'- uCACGuaCcccucgucgaaACGcaGCGGGCGUCGGCGc -3'
miRNA:   3'- cGUGCccG-----------UGCaaCGCCCGCAGCCGC- -5'
6990 5' -61 NC_001875.2 + 91862 0.66 0.705609
Target:  5'- cCACGGGCccccaggGCGccUGCuGGUG-CGGCGg -3'
miRNA:   3'- cGUGCCCG-------UGCa-ACGcCCGCaGCCGC- -5'
6990 5' -61 NC_001875.2 + 29068 0.66 0.696874
Target:  5'- -aGCGGGCGUGUUGCugccacGGcGCGUCGuCGg -3'
miRNA:   3'- cgUGCCCGUGCAACG------CC-CGCAGCcGC- -5'
6990 5' -61 NC_001875.2 + 93194 0.66 0.696874
Target:  5'- aGCACGcGGUACG--GCGa--GUCGGCGg -3'
miRNA:   3'- -CGUGC-CCGUGCaaCGCccgCAGCCGC- -5'
6990 5' -61 NC_001875.2 + 1526 0.66 0.695901
Target:  5'- gGUGCGGGCgcucucgaacggcGCGUgcuauuuuuaGCGGuGCGUCaGCGa -3'
miRNA:   3'- -CGUGCCCG-------------UGCAa---------CGCC-CGCAGcCGC- -5'
6990 5' -61 NC_001875.2 + 121953 0.66 0.687122
Target:  5'- uGCGCGcGGCAgCGUUGCa-GCGUauucaaaaagcUGGCGg -3'
miRNA:   3'- -CGUGC-CCGU-GCAACGccCGCA-----------GCCGC- -5'
6990 5' -61 NC_001875.2 + 88125 0.66 0.687122
Target:  5'- -uGCGGGCACGgugcugaGCGGcgccaaaauuGUGUgGGCGc -3'
miRNA:   3'- cgUGCCCGUGCaa-----CGCC----------CGCAgCCGC- -5'
6990 5' -61 NC_001875.2 + 59032 0.66 0.677327
Target:  5'- aGCGCcugagGGGCgaaauugccGCGUUGCaaaacGCGUCGGCa -3'
miRNA:   3'- -CGUG-----CCCG---------UGCAACGcc---CGCAGCCGc -5'
6990 5' -61 NC_001875.2 + 3101 0.66 0.677327
Target:  5'- cGCGCcgGGGCGCGgcucGCGGcGCagaccugggCGGCGa -3'
miRNA:   3'- -CGUG--CCCGUGCaa--CGCC-CGca-------GCCGC- -5'
6990 5' -61 NC_001875.2 + 86372 0.66 0.677327
Target:  5'- cGCGCuagacGCGCGgcUGCGGGCGcCGaGCGc -3'
miRNA:   3'- -CGUGcc---CGUGCa-ACGCCCGCaGC-CGC- -5'
6990 5' -61 NC_001875.2 + 22578 0.66 0.667498
Target:  5'- cGCcCGGGCGCGgcGCGuuGGCcgGcCGGCu -3'
miRNA:   3'- -CGuGCCCGUGCaaCGC--CCG--CaGCCGc -5'
6990 5' -61 NC_001875.2 + 21455 0.66 0.657641
Target:  5'- cCACGGGCACGca-CGaGcCGUCGGCc -3'
miRNA:   3'- cGUGCCCGUGCaacGCcC-GCAGCCGc -5'
6990 5' -61 NC_001875.2 + 124721 0.66 0.657641
Target:  5'- gGCAaGcGGCGCGUgGCGGucaaUGUCGGCa -3'
miRNA:   3'- -CGUgC-CCGUGCAaCGCCc---GCAGCCGc -5'
6990 5' -61 NC_001875.2 + 3052 0.67 0.647766
Target:  5'- aGCGCGuaagaGGCGCGcaGCGGcGCGcCGGgGu -3'
miRNA:   3'- -CGUGC-----CCGUGCaaCGCC-CGCaGCCgC- -5'
6990 5' -61 NC_001875.2 + 29779 0.67 0.647766
Target:  5'- uGUACGGcCGCGggugGaCGGGCGUgucaggcuacgcCGGCGa -3'
miRNA:   3'- -CGUGCCcGUGCaa--C-GCCCGCA------------GCCGC- -5'
6990 5' -61 NC_001875.2 + 39607 0.67 0.647766
Target:  5'- uGCACGGGCuaaaGUaGCGGcCGgcccCGGCa -3'
miRNA:   3'- -CGUGCCCGug--CAaCGCCcGCa---GCCGc -5'
6990 5' -61 NC_001875.2 + 124624 0.67 0.647766
Target:  5'- uGCAgcUGGGC-CGUguuggacacgaGCGGGuCGUUGGCa -3'
miRNA:   3'- -CGU--GCCCGuGCAa----------CGCCC-GCAGCCGc -5'
6990 5' -61 NC_001875.2 + 83797 0.67 0.647766
Target:  5'- aGCGCGcGCccuCGUgccUGUGGGCGgCGGCc -3'
miRNA:   3'- -CGUGCcCGu--GCA---ACGCCCGCaGCCGc -5'
6990 5' -61 NC_001875.2 + 69946 0.67 0.647766
Target:  5'- aCAC-GGCGCGUguCGGGCcaCGGCGa -3'
miRNA:   3'- cGUGcCCGUGCAacGCCCGcaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.