miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 3' -45.5 NC_001875.2 + 121801 0.67 0.999847
Target:  5'- cGGCGuagucgaGCAGCUGUGgcUUGAucacgGUCa -3'
miRNA:   3'- -CCGC-------UGUCGGCGCaaAACUuuua-UAG- -5'
6991 3' -45.5 NC_001875.2 + 65779 0.67 0.999826
Target:  5'- gGGCGGCGGCgCGuCGUcgUUGAgcgccagcuugagcgGAAUGUa -3'
miRNA:   3'- -CCGCUGUCG-GC-GCAa-AACU---------------UUUAUAg -5'
6991 3' -45.5 NC_001875.2 + 77033 0.67 0.999806
Target:  5'- gGGCucGGCAGCCGCGUcgcggUGcuAGUGc- -3'
miRNA:   3'- -CCG--CUGUCGGCGCAaa---ACuuUUAUag -5'
6991 3' -45.5 NC_001875.2 + 130015 0.68 0.99975
Target:  5'- uGGCGGCGGCgGCGgcaUGcucgugGUCa -3'
miRNA:   3'- -CCGCUGUCGgCGCaaaACuuuua-UAG- -5'
6991 3' -45.5 NC_001875.2 + 59893 0.68 0.99968
Target:  5'- cGGCGACAgGCUGCGcgcgGAGcgcGcgGUCa -3'
miRNA:   3'- -CCGCUGU-CGGCGCaaaaCUU---UuaUAG- -5'
6991 3' -45.5 NC_001875.2 + 24088 0.68 0.99968
Target:  5'- uGGCGcACAGuuGCGUcUUGAu------ -3'
miRNA:   3'- -CCGC-UGUCggCGCAaAACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 109141 0.68 0.999593
Target:  5'- uGGCGACgacuagggcgAGCCgaugcaugauGCGUUUUGAGuuUGUg -3'
miRNA:   3'- -CCGCUG----------UCGG----------CGCAAAACUUuuAUAg -5'
6991 3' -45.5 NC_001875.2 + 102430 0.68 0.999593
Target:  5'- cGGCGACGagguGCgcugCGCGUUUUGcAAGGUAg- -3'
miRNA:   3'- -CCGCUGU----CG----GCGCAAAAC-UUUUAUag -5'
6991 3' -45.5 NC_001875.2 + 63452 0.68 0.999487
Target:  5'- cGGCGGcCAGCCGCGaggcgUUGGu------ -3'
miRNA:   3'- -CCGCU-GUCGGCGCaa---AACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 130063 0.68 0.999487
Target:  5'- cGGCGGCGGCgGCGgcaUGcucgugGUCa -3'
miRNA:   3'- -CCGCUGUCGgCGCaaaACuuuua-UAG- -5'
6991 3' -45.5 NC_001875.2 + 83253 0.68 0.99945
Target:  5'- uGGCGAcCAGCCGCuaaucaguccGGAUAUCa -3'
miRNA:   3'- -CCGCU-GUCGGCGcaaaacu---UUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 81758 0.69 0.999357
Target:  5'- cGCGGCgGGCCGCGUac-GAAAucAUCc -3'
miRNA:   3'- cCGCUG-UCGGCGCAaaaCUUUuaUAG- -5'
6991 3' -45.5 NC_001875.2 + 73620 0.69 0.999357
Target:  5'- cGGCGGCGGCUGCGg------------ -3'
miRNA:   3'- -CCGCUGUCGGCGCaaaacuuuuauag -5'
6991 3' -45.5 NC_001875.2 + 26220 0.69 0.999357
Target:  5'- cGGCGACcagGGCCGCGUaccgGGGcAUGg- -3'
miRNA:   3'- -CCGCUG---UCGGCGCAaaa-CUUuUAUag -5'
6991 3' -45.5 NC_001875.2 + 67840 0.69 0.999009
Target:  5'- aGUGGC-GCgGCGUgcUGAAAAUGUUg -3'
miRNA:   3'- cCGCUGuCGgCGCAaaACUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 89289 0.69 0.999009
Target:  5'- cGCGGCuGGgCGCGaccaccgUGGAGAUGUCg -3'
miRNA:   3'- cCGCUG-UCgGCGCaaa----ACUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 130932 0.69 0.998782
Target:  5'- uGGCGGCGguuugcGCCGUGUgUUUGGAAAc--- -3'
miRNA:   3'- -CCGCUGU------CGGCGCA-AAACUUUUauag -5'
6991 3' -45.5 NC_001875.2 + 81368 0.69 0.998782
Target:  5'- cGCGcCGGCCGCGUcgcuccUGAuuGUGUUu -3'
miRNA:   3'- cCGCuGUCGGCGCAaa----ACUuuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 49461 0.69 0.998512
Target:  5'- aGCGACGgucGCCGCGUUgUGcaGAAAUAg- -3'
miRNA:   3'- cCGCUGU---CGGCGCAAaAC--UUUUAUag -5'
6991 3' -45.5 NC_001875.2 + 84450 0.69 0.998422
Target:  5'- cGGCGGCGGCgguagaccaugaugCGCGUgUUGucGAUGUa -3'
miRNA:   3'- -CCGCUGUCG--------------GCGCAaAACuuUUAUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.