miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 5' -54.3 NC_001875.2 + 81315 0.67 0.904701
Target:  5'- gGCGGCGCCuccuccucgucaucGUGC-CGcGcGGCGCGCUGg -3'
miRNA:   3'- -UGCUGUGG--------------CACGaGUuC-UUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 78531 0.67 0.900176
Target:  5'- aGCGACuaCGUGCcCAAuuccauGAACGUGCUGa -3'
miRNA:   3'- -UGCUGugGCACGaGUU------CUUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 21499 0.67 0.900176
Target:  5'- gGCGACGCCGagUGCagccCAA--ACGCGCUa -3'
miRNA:   3'- -UGCUGUGGC--ACGa---GUUcuUGCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 45988 0.67 0.900176
Target:  5'- gGCGAacuCGCCGUGCacaacagCAGGAucggccgcccACGCaGCUGg -3'
miRNA:   3'- -UGCU---GUGGCACGa------GUUCU----------UGCG-CGAC- -5'
6991 5' -54.3 NC_001875.2 + 18256 0.67 0.900176
Target:  5'- uCGaACGCCGUGCUggccCAAuGGCGCGCc- -3'
miRNA:   3'- uGC-UGUGGCACGA----GUUcUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 10864 0.67 0.900176
Target:  5'- gACGACGCgGUgGCcgCGucGGugGCGCUGc -3'
miRNA:   3'- -UGCUGUGgCA-CGa-GUu-CUugCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 39312 0.67 0.900176
Target:  5'- nGC-ACACCGUGC-CGGcGGcgugcGCGCGCUGc -3'
miRNA:   3'- -UGcUGUGGCACGaGUU-CU-----UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 29439 0.67 0.896202
Target:  5'- cGCGACGCCGacacguaccuuguuuUGCUgaAAGAguuGCGCGCc- -3'
miRNA:   3'- -UGCUGUGGC---------------ACGAg-UUCU---UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 74272 0.67 0.893505
Target:  5'- cGCGACGCCGcGC-CGGuuuACGCGCg- -3'
miRNA:   3'- -UGCUGUGGCaCGaGUUcu-UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 83597 0.67 0.892142
Target:  5'- gGCGcCGCCGUaGCUCAAcuugcagcaauuGACGCGCUc -3'
miRNA:   3'- -UGCuGUGGCA-CGAGUUc-----------UUGCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 98307 0.67 0.886594
Target:  5'- cCGACGCCGUGgUgguuucgcccggCAAGc-CGCGCUGc -3'
miRNA:   3'- uGCUGUGGCACgA------------GUUCuuGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 110261 0.67 0.886594
Target:  5'- aACGGCuggGCCG-GCUgGccgcGGAGCGCGCg- -3'
miRNA:   3'- -UGCUG---UGGCaCGAgU----UCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 95431 0.67 0.879448
Target:  5'- cGCGGCGCCG-GC-CAGcguGCGCgGCUGg -3'
miRNA:   3'- -UGCUGUGGCaCGaGUUcu-UGCG-CGAC- -5'
6991 5' -54.3 NC_001875.2 + 65211 0.68 0.86447
Target:  5'- uACGuaACGCUGuUGCUCAAGcGCGCcacGCUGc -3'
miRNA:   3'- -UGC--UGUGGC-ACGAGUUCuUGCG---CGAC- -5'
6991 5' -54.3 NC_001875.2 + 111989 0.68 0.86447
Target:  5'- cGCGACGCg--GC-CGAGucuuGCGCGCUGu -3'
miRNA:   3'- -UGCUGUGgcaCGaGUUCu---UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 2424 0.68 0.86447
Target:  5'- cGCG-CACCGUGCUC---AugGUGCUu -3'
miRNA:   3'- -UGCuGUGGCACGAGuucUugCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 111165 0.68 0.85665
Target:  5'- cACGGCGC--UGCUUAGcgauuuucuuGGGCGCGCUGg -3'
miRNA:   3'- -UGCUGUGgcACGAGUU----------CUUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 90961 0.68 0.85665
Target:  5'- cGCGaaGCGCgCGUGCacCAGGAugGCGCc- -3'
miRNA:   3'- -UGC--UGUG-GCACGa-GUUCUugCGCGac -5'
6991 5' -54.3 NC_001875.2 + 89552 0.68 0.848616
Target:  5'- uUGGCGCCGcgggugcccagUGUuggCGAGAGCGCGCa- -3'
miRNA:   3'- uGCUGUGGC-----------ACGa--GUUCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 110808 0.68 0.848616
Target:  5'- uACaACGCCGcGCagGuGGACGCGCUGg -3'
miRNA:   3'- -UGcUGUGGCaCGagUuCUUGCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.