miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6992 5' -61 NC_001875.2 + 32467 0.66 0.659976
Target:  5'- cGGUGCGgcGCuUUGGCCacuUGGCGGgCGCg -3'
miRNA:   3'- aCCACGCa-CG-AGUCGGc--GCUGCC-GCG- -5'
6992 5' -61 NC_001875.2 + 54726 0.66 0.659976
Target:  5'- cGG-GCGUGgaCagguAGCCGUG-CGGgCGCa -3'
miRNA:   3'- aCCaCGCACgaG----UCGGCGCuGCC-GCG- -5'
6992 5' -61 NC_001875.2 + 93403 0.66 0.659976
Target:  5'- gGGcGCGUuaaUCAGCCGUuuaGAagaGGCGCu -3'
miRNA:   3'- aCCaCGCAcg-AGUCGGCG---CUg--CCGCG- -5'
6992 5' -61 NC_001875.2 + 82177 0.66 0.659976
Target:  5'- cGGUaCGUGCgCAaccGCCGCGggcaguACGGCGa -3'
miRNA:   3'- aCCAcGCACGaGU---CGGCGC------UGCCGCg -5'
6992 5' -61 NC_001875.2 + 26368 0.66 0.659976
Target:  5'- aGGUGC-UGCa---CCGCGACGGgGUc -3'
miRNA:   3'- aCCACGcACGagucGGCGCUGCCgCG- -5'
6992 5' -61 NC_001875.2 + 117296 0.66 0.658979
Target:  5'- aUGGccGCGUGCgcCAGCUcacucuuguugaGCGgcuugacACGGCGCg -3'
miRNA:   3'- -ACCa-CGCACGa-GUCGG------------CGC-------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 31676 0.66 0.653994
Target:  5'- cUGGgccaGCGUGC-CGGCguggaccgccgcuugCGCGccgcCGGCGCa -3'
miRNA:   3'- -ACCa---CGCACGaGUCG---------------GCGCu---GCCGCG- -5'
6992 5' -61 NC_001875.2 + 46184 0.66 0.650002
Target:  5'- uUGGUgGCGUucaagaccGCUUcgAGCUcguugaGUGGCGGCGCu -3'
miRNA:   3'- -ACCA-CGCA--------CGAG--UCGG------CGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 88177 0.66 0.650002
Target:  5'- cGGUGCaUGgUCgAGgCGUGcaccaACGGCGCg -3'
miRNA:   3'- aCCACGcACgAG-UCgGCGC-----UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 95016 0.66 0.650002
Target:  5'- gUGGcGCGgGCgcgCAacuGCCGCGGCGcguaacGCGCa -3'
miRNA:   3'- -ACCaCGCaCGa--GU---CGGCGCUGC------CGCG- -5'
6992 5' -61 NC_001875.2 + 100875 0.66 0.650002
Target:  5'- ---cGCGagGCgCAGCgcgCGCGugGGCGCc -3'
miRNA:   3'- accaCGCa-CGaGUCG---GCGCugCCGCG- -5'
6992 5' -61 NC_001875.2 + 34164 0.66 0.650002
Target:  5'- aUGGUgGCGcuuUGUUCGuuGCCGuCGGCGucGCGCa -3'
miRNA:   3'- -ACCA-CGC---ACGAGU--CGGC-GCUGC--CGCG- -5'
6992 5' -61 NC_001875.2 + 93943 0.66 0.650002
Target:  5'- cGGUGCcaGUGCcgcgccagcaAGCCGC--UGGCGCg -3'
miRNA:   3'- aCCACG--CACGag--------UCGGCGcuGCCGCG- -5'
6992 5' -61 NC_001875.2 + 79723 0.66 0.640016
Target:  5'- gUGGUaCGUGCgcagaauGUCGCGcucuuCGGCGCu -3'
miRNA:   3'- -ACCAcGCACGagu----CGGCGCu----GCCGCG- -5'
6992 5' -61 NC_001875.2 + 84427 0.66 0.640016
Target:  5'- aGGUGCcaucgGCggaUCGGgaGCGGCGGCGg -3'
miRNA:   3'- aCCACGca---CG---AGUCggCGCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 93437 0.66 0.640016
Target:  5'- aUGuGUGCGUGUUCcggaaacauGGCCGCGcACuuugucaGCGCc -3'
miRNA:   3'- -AC-CACGCACGAG---------UCGGCGC-UGc------CGCG- -5'
6992 5' -61 NC_001875.2 + 39324 0.66 0.630023
Target:  5'- cGGcgGCGUGCgCGcGCUGCa--GGCGCa -3'
miRNA:   3'- aCCa-CGCACGaGU-CGGCGcugCCGCG- -5'
6992 5' -61 NC_001875.2 + 65704 0.66 0.630023
Target:  5'- gUGGUGCGUGUacauUguGCgacgCGaCGACGGCcaGCu -3'
miRNA:   3'- -ACCACGCACG----AguCG----GC-GCUGCCG--CG- -5'
6992 5' -61 NC_001875.2 + 63123 0.66 0.630023
Target:  5'- aUGGgauaGCG-GCcgGGCgCGCGGcCGGCGCa -3'
miRNA:   3'- -ACCa---CGCaCGagUCG-GCGCU-GCCGCG- -5'
6992 5' -61 NC_001875.2 + 12760 0.66 0.630023
Target:  5'- aUGGgugGCGguuguUGUcCAGCCGgGGCGccGCGCa -3'
miRNA:   3'- -ACCa--CGC-----ACGaGUCGGCgCUGC--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.