miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 3' -63.8 NC_001875.2 + 77257 0.66 0.488352
Target:  5'- cCGUgGGCGCgCCGCCGgGCgaagcggccgccgcgGCGCa--- -3'
miRNA:   3'- -GCG-CCGCG-GGCGGCgCGa--------------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 20651 0.66 0.487425
Target:  5'- -aCGGCGCgCGCCGCcCaGCGCg--- -3'
miRNA:   3'- gcGCCGCGgGCGGCGcGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 123341 0.66 0.487425
Target:  5'- gCGCGGCGCCCacacggaCgGCGCccgGCGUg--- -3'
miRNA:   3'- -GCGCCGCGGGc------GgCGCGa--CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 127414 0.66 0.487425
Target:  5'- gGCGGCGCgcgucagcaugCCGCCGUGCaUGaGCa--- -3'
miRNA:   3'- gCGCCGCG-----------GGCGGCGCG-ACgCGaauu -5'
6993 3' -63.8 NC_001875.2 + 91689 0.66 0.487425
Target:  5'- uCGCGuuGCCgGCCGUGCgGUGCc--- -3'
miRNA:   3'- -GCGCcgCGGgCGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 29266 0.66 0.487425
Target:  5'- gCGCGGC-CgCCGaCCGCGCcggcgggGCGCg--- -3'
miRNA:   3'- -GCGCCGcG-GGC-GGCGCGa------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 31687 0.66 0.487425
Target:  5'- uGcCGGCGUggaCCGCCGC-UUGCGCg--- -3'
miRNA:   3'- gC-GCCGCG---GGCGGCGcGACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 77394 0.66 0.478206
Target:  5'- uGCGGCGCcgcggcuaacgaCCGCCacGCGCUGUucgGCg--- -3'
miRNA:   3'- gCGCCGCG------------GGCGG--CGCGACG---CGaauu -5'
6993 3' -63.8 NC_001875.2 + 50501 0.66 0.478206
Target:  5'- gCGCGGCaccaGCgCGCCGCGCgGCa----- -3'
miRNA:   3'- -GCGCCG----CGgGCGGCGCGaCGcgaauu -5'
6993 3' -63.8 NC_001875.2 + 89344 0.66 0.478206
Target:  5'- uGCGGCGCaCGCggacgacggcgUGCGCgUGCGCg--- -3'
miRNA:   3'- gCGCCGCGgGCG-----------GCGCG-ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 65070 0.66 0.478206
Target:  5'- gGCGGCGCCaacaCGCUGgGCaaggacGCGCUc-- -3'
miRNA:   3'- gCGCCGCGG----GCGGCgCGa-----CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 92515 0.66 0.469074
Target:  5'- aCG-GGCGCUCGUgCGCGCccgGCGCg--- -3'
miRNA:   3'- -GCgCCGCGGGCG-GCGCGa--CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 21562 0.66 0.469074
Target:  5'- aCGgGGCaGCCCG-CGCGCUcCGCg--- -3'
miRNA:   3'- -GCgCCG-CGGGCgGCGCGAcGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 67943 0.66 0.469074
Target:  5'- gGCGGCGCCaCGgCGCGCUu--CUUAc -3'
miRNA:   3'- gCGCCGCGG-GCgGCGCGAcgcGAAUu -5'
6993 3' -63.8 NC_001875.2 + 118362 0.66 0.469074
Target:  5'- aGCGGCgGCCCGCUguacgaguGCGacCUGUGCa--- -3'
miRNA:   3'- gCGCCG-CGGGCGG--------CGC--GACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 68563 0.66 0.469074
Target:  5'- gGCGGCGgCgGUCGCGCaccGCGUg--- -3'
miRNA:   3'- gCGCCGCgGgCGGCGCGa--CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 120743 0.66 0.469074
Target:  5'- uGCGGCGCCgagacgggGCCGUGUccaggGCGCg--- -3'
miRNA:   3'- gCGCCGCGGg-------CGGCGCGa----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 58893 0.66 0.469074
Target:  5'- cCGUGGCGCCCGaaaCGCUGCa----- -3'
miRNA:   3'- -GCGCCGCGGGCggcGCGACGcgaauu -5'
6993 3' -63.8 NC_001875.2 + 100731 0.66 0.463638
Target:  5'- uGCGGCGCgCgGCaCGCGUucguuaaaaaacuuuUGCGCg--- -3'
miRNA:   3'- gCGCCGCG-GgCG-GCGCG---------------ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 115756 0.66 0.460032
Target:  5'- aGCGGCGUgCGCCaaaccgGCGCcgUGUGCg--- -3'
miRNA:   3'- gCGCCGCGgGCGG------CGCG--ACGCGaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.