miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 5' -50.2 NC_001875.2 + 124662 0.66 0.986583
Target:  5'- ---cUCGGaauguCGGCGAUCGCGuccAGCGCAAa -3'
miRNA:   3'- aaaaAGUU-----GUUGCUGGCGC---UCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 86047 0.66 0.986409
Target:  5'- cUUUUCcACAACGACCGCcacguccuuguccGAGUaGCGu -3'
miRNA:   3'- aAAAAGuUGUUGCUGGCG-------------CUCG-CGUu -5'
6993 5' -50.2 NC_001875.2 + 131501 0.66 0.984765
Target:  5'- ---aUCGACAgucuGCGGCgCGCG-GUGCAGc -3'
miRNA:   3'- aaaaAGUUGU----UGCUG-GCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 21679 0.66 0.984765
Target:  5'- ----gCGACGcCGcCCGaCGAGCGCGAc -3'
miRNA:   3'- aaaaaGUUGUuGCuGGC-GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 125334 0.66 0.984765
Target:  5'- ---gUgGACGGCGGCCaGCGuguuGGCGCGg -3'
miRNA:   3'- aaaaAgUUGUUGCUGG-CGC----UCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 37752 0.66 0.984765
Target:  5'- --aUUUAACAaugaACGugCaCGAGCGCAu -3'
miRNA:   3'- aaaAAGUUGU----UGCugGcGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 59353 0.66 0.982766
Target:  5'- ----aCAACAGaaACCGCGAguuuGCGCAAg -3'
miRNA:   3'- aaaaaGUUGUUgcUGGCGCU----CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 53678 0.66 0.982766
Target:  5'- ---aUCAagACGGCG-CCGCGcAGCGCc- -3'
miRNA:   3'- aaaaAGU--UGUUGCuGGCGC-UCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 85300 0.66 0.982129
Target:  5'- -----gGGCGGCGcgggcgcgggcauuGCCGCGGGCGCu- -3'
miRNA:   3'- aaaaagUUGUUGC--------------UGGCGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 71144 0.67 0.980575
Target:  5'- ---cUCAGC-GCGGCCGCGuuGgGCAu -3'
miRNA:   3'- aaaaAGUUGuUGCUGGCGCu-CgCGUu -5'
6993 5' -50.2 NC_001875.2 + 43531 0.67 0.980575
Target:  5'- ---gUgGACGugACGACCGCG-GUGCGGa -3'
miRNA:   3'- aaaaAgUUGU--UGCUGGCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 72355 0.67 0.980575
Target:  5'- ---cUCGACGcgcuugucuCGGCCGCGcuGCGCAAu -3'
miRNA:   3'- aaaaAGUUGUu--------GCUGGCGCu-CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 74106 0.67 0.980575
Target:  5'- ----gCAGCGACG-CCGUGcuGGCGCGu -3'
miRNA:   3'- aaaaaGUUGUUGCuGGCGC--UCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 47964 0.67 0.980575
Target:  5'- ----aCAGCAGCGACgaggaaccgUGCGAGCGgGg -3'
miRNA:   3'- aaaaaGUUGUUGCUG---------GCGCUCGCgUu -5'
6993 5' -50.2 NC_001875.2 + 83551 0.67 0.980575
Target:  5'- uUUUUUUAACAAUGGCaCGCG-GCGgAc -3'
miRNA:   3'- -AAAAAGUUGUUGCUG-GCGCuCGCgUu -5'
6993 5' -50.2 NC_001875.2 + 69988 0.67 0.978182
Target:  5'- ---gUCAGCAGC-ACCGCGAGgauaaauaGCAGg -3'
miRNA:   3'- aaaaAGUUGUUGcUGGCGCUCg-------CGUU- -5'
6993 5' -50.2 NC_001875.2 + 100829 0.67 0.978182
Target:  5'- --aUUCGAUugccaaguCGGCCGCGcGCGCGu -3'
miRNA:   3'- aaaAAGUUGuu------GCUGGCGCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 1827 0.67 0.978182
Target:  5'- ---gUCAGCAACGACCcugcuuuuCGGGUGUGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 89392 0.67 0.978182
Target:  5'- ---cUCGccGCAGCGGCCGCuGA-CGCAGg -3'
miRNA:   3'- aaaaAGU--UGUUGCUGGCG-CUcGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 51705 0.67 0.978182
Target:  5'- -----aAGCAGCGACgCGCacGAGUGCGAc -3'
miRNA:   3'- aaaaagUUGUUGCUG-GCG--CUCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.