miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 5' -57.5 NC_001875.2 + 62397 0.66 0.827916
Target:  5'- ----cGUGGCCGgcGCGCaaaCGCCGGc -3'
miRNA:   3'- cgguuCACCGGUuuCGCGgc-GUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 41482 0.66 0.827916
Target:  5'- uGUCuuguGUGGUCu--GCGCCG-GCCGGu -3'
miRNA:   3'- -CGGuu--CACCGGuuuCGCGGCgUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 93255 0.66 0.827916
Target:  5'- cGCgCAGcUGGCCcguguAGAGCaggaugggcacGCCGCGCCGa -3'
miRNA:   3'- -CG-GUUcACCGG-----UUUCG-----------CGGCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 76324 0.66 0.827916
Target:  5'- uCCGAGccGCCAucgagcAGGUGCUGCGCCa- -3'
miRNA:   3'- cGGUUCacCGGU------UUCGCGGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 115883 0.66 0.827916
Target:  5'- gGCCGGGcaggaugcGGUCAAAGUGCUgGCGCCc- -3'
miRNA:   3'- -CGGUUCa-------CCGGUUUCGCGG-CGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 92507 0.66 0.827916
Target:  5'- cGUCAGGcUGcGCCugcAGCGCgCGCacgccGCCGGc -3'
miRNA:   3'- -CGGUUC-AC-CGGuu-UCGCG-GCG-----UGGCC- -5'
6994 5' -57.5 NC_001875.2 + 130144 0.66 0.827916
Target:  5'- aGCauuuGUGGCCAcagaaGAGgGCCGCGauuuuaaaugcUCGGg -3'
miRNA:   3'- -CGguu-CACCGGU-----UUCgCGGCGU-----------GGCC- -5'
6994 5' -57.5 NC_001875.2 + 9761 0.66 0.827916
Target:  5'- cGCCGuuccgaGGCC-AAGCGCaCGCGgcacauCCGGg -3'
miRNA:   3'- -CGGUuca---CCGGuUUCGCG-GCGU------GGCC- -5'
6994 5' -57.5 NC_001875.2 + 89130 0.66 0.827076
Target:  5'- aCCGGGUGcGCCuuGcguacgaaaccgcGCGCCGCGCgGu -3'
miRNA:   3'- cGGUUCAC-CGGuuU-------------CGCGGCGUGgCc -5'
6994 5' -57.5 NC_001875.2 + 67128 0.66 0.819436
Target:  5'- cGCCu--UGGCC--AGCGCCguguuGCugCGGc -3'
miRNA:   3'- -CGGuucACCGGuuUCGCGG-----CGugGCC- -5'
6994 5' -57.5 NC_001875.2 + 105251 0.66 0.819436
Target:  5'- cGCCAGGUGuGC--GGGCGCUGUuucACCa- -3'
miRNA:   3'- -CGGUUCAC-CGguUUCGCGGCG---UGGcc -5'
6994 5' -57.5 NC_001875.2 + 92791 0.66 0.819436
Target:  5'- aGCCAAaucgGGCagcuuacagCGAAcGUGCCGCGCCGcGg -3'
miRNA:   3'- -CGGUUca--CCG---------GUUU-CGCGGCGUGGC-C- -5'
6994 5' -57.5 NC_001875.2 + 37429 0.66 0.819436
Target:  5'- gGCCGuggcgcagucGGcGGCCAAauAGcCGCCGCAauGGa -3'
miRNA:   3'- -CGGU----------UCaCCGGUU--UC-GCGGCGUggCC- -5'
6994 5' -57.5 NC_001875.2 + 70310 0.66 0.819436
Target:  5'- cCCAcauGaUGGCCGccAAGCGCgaGCACgCGGa -3'
miRNA:   3'- cGGUu--C-ACCGGU--UUCGCGg-CGUG-GCC- -5'
6994 5' -57.5 NC_001875.2 + 99043 0.66 0.819436
Target:  5'- cGCCGAGcuuGCC--GGCGCgGCGCCc- -3'
miRNA:   3'- -CGGUUCac-CGGuuUCGCGgCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 41824 0.66 0.819436
Target:  5'- cGCCGc--GGCCAGuugcgcguccAGuUGCCGCGCCGcGg -3'
miRNA:   3'- -CGGUucaCCGGUU----------UC-GCGGCGUGGC-C- -5'
6994 5' -57.5 NC_001875.2 + 42328 0.66 0.818578
Target:  5'- cGCCcAGcGGCCccaggcgGAAGCGCaguCGCAgCGGc -3'
miRNA:   3'- -CGGuUCaCCGG-------UUUCGCG---GCGUgGCC- -5'
6994 5' -57.5 NC_001875.2 + 81431 0.66 0.814266
Target:  5'- uGUgAAGcUGGCCGucuGCGCCGUccgcaaaaaguacacGCUGGu -3'
miRNA:   3'- -CGgUUC-ACCGGUuu-CGCGGCG---------------UGGCC- -5'
6994 5' -57.5 NC_001875.2 + 20421 0.66 0.810786
Target:  5'- aCCAAcGUGGCCGAGGUGCaggaaaauUGCgACCa- -3'
miRNA:   3'- cGGUU-CACCGGUUUCGCG--------GCG-UGGcc -5'
6994 5' -57.5 NC_001875.2 + 70192 0.66 0.810786
Target:  5'- aGCCGGGcGGCgAcggcgaccacuGGGCGCCcgagGCGCCGc -3'
miRNA:   3'- -CGGUUCaCCGgU-----------UUCGCGG----CGUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.