miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6995 5' -48.2 NC_001875.2 + 1914 0.68 0.992049
Target:  5'- cGGGUGcGCACGCGCUUgaaaGGAGUGu -3'
miRNA:   3'- uUUUAU-CGUGCGCGAAaagcUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 5540 0.68 0.987931
Target:  5'- cGGAggAGgACGCGCggcaaUUCGAGgAGCGa -3'
miRNA:   3'- -UUUuaUCgUGCGCGaa---AAGCUC-UCGC- -5'
6995 5' -48.2 NC_001875.2 + 17064 0.97 0.065133
Target:  5'- aAAAAUAGCACGCGC-UUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGCUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 17129 0.84 0.361427
Target:  5'- aAAAAUAGCACaCGCcgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGcGCGaaAAGCUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 17195 0.74 0.875256
Target:  5'- aAAAAUAGCACaCGCcgUUCGcGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGcGCGaaAAGCuCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 26537 0.66 0.998544
Target:  5'- ----gAGCugGCGCUUgagUCGGcGuGCu -3'
miRNA:   3'- uuuuaUCGugCGCGAAa--AGCU-CuCGc -5'
6995 5' -48.2 NC_001875.2 + 26785 0.72 0.917374
Target:  5'- ----gAGCgACGCGCcg-UCGAGGGUGg -3'
miRNA:   3'- uuuuaUCG-UGCGCGaaaAGCUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 27195 0.67 0.995716
Target:  5'- cAGGUGGCACGCGCUaggaUCGGccuugucGGCGc -3'
miRNA:   3'- uUUUAUCGUGCGCGAaa--AGCUc------UCGC- -5'
6995 5' -48.2 NC_001875.2 + 28926 0.78 0.69118
Target:  5'- --cGUGGC-CGCGUaUUUCGAGAGUGg -3'
miRNA:   3'- uuuUAUCGuGCGCGaAAAGCUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 31553 0.67 0.994965
Target:  5'- -----uGCACGCGCUgcaggUUGGGcccGGCGg -3'
miRNA:   3'- uuuuauCGUGCGCGAaa---AGCUC---UCGC- -5'
6995 5' -48.2 NC_001875.2 + 31980 0.7 0.965576
Target:  5'- --uGUGGCGCGCGUacggccggUUUGuGAGCGg -3'
miRNA:   3'- uuuUAUCGUGCGCGaa------AAGCuCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 33298 0.67 0.994109
Target:  5'- cAAAGUAGCACuGCGggUUggCGAGcGCGu -3'
miRNA:   3'- -UUUUAUCGUG-CGCgaAAa-GCUCuCGC- -5'
6995 5' -48.2 NC_001875.2 + 34907 0.69 0.977629
Target:  5'- cGAGAUcaaGGCGCGCcaGUUUUUUGGGuGCGg -3'
miRNA:   3'- -UUUUA---UCGUGCG--CGAAAAGCUCuCGC- -5'
6995 5' -48.2 NC_001875.2 + 36650 0.7 0.968943
Target:  5'- gAAGAUGGCcgcgucguGCGCGCUgagcUCGGGGcGCGu -3'
miRNA:   3'- -UUUUAUCG--------UGCGCGAaa--AGCUCU-CGC- -5'
6995 5' -48.2 NC_001875.2 + 43315 0.68 0.987931
Target:  5'- ----cGGCGCGCGCg---CGGGucGGCGu -3'
miRNA:   3'- uuuuaUCGUGCGCGaaaaGCUC--UCGC- -5'
6995 5' -48.2 NC_001875.2 + 46332 0.66 0.998233
Target:  5'- --cGUGGC-CGcCGCUUUUgGAGgAGCa -3'
miRNA:   3'- uuuUAUCGuGC-GCGAAAAgCUC-UCGc -5'
6995 5' -48.2 NC_001875.2 + 47323 0.67 0.995716
Target:  5'- aAAGAUGacGCACGUGCUg-UCGGcGGCGg -3'
miRNA:   3'- -UUUUAU--CGUGCGCGAaaAGCUcUCGC- -5'
6995 5' -48.2 NC_001875.2 + 48058 0.68 0.989454
Target:  5'- ----gGGCGCGCGCUacaaCGAGuGGCa -3'
miRNA:   3'- uuuuaUCGUGCGCGAaaa-GCUC-UCGc -5'
6995 5' -48.2 NC_001875.2 + 50017 0.68 0.987931
Target:  5'- ----gGGCGCGCGUgg-UCGccGGGCGg -3'
miRNA:   3'- uuuuaUCGUGCGCGaaaAGCu-CUCGC- -5'
6995 5' -48.2 NC_001875.2 + 55319 0.7 0.974683
Target:  5'- -cAGUGGCGCGCGacggUgaugacgcgccgcUUCGGGGGCGc -3'
miRNA:   3'- uuUUAUCGUGCGCga--A-------------AAGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.