miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6995 5' -48.2 NC_001875.2 + 1914 0.68 0.992049
Target:  5'- cGGGUGcGCACGCGCUUgaaaGGAGUGu -3'
miRNA:   3'- uUUUAU-CGUGCGCGAAaagcUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 48058 0.68 0.989454
Target:  5'- ----gGGCGCGCGCUacaaCGAGuGGCa -3'
miRNA:   3'- uuuuaUCGUGCGCGAaaa-GCUC-UCGc -5'
6995 5' -48.2 NC_001875.2 + 50017 0.68 0.987931
Target:  5'- ----gGGCGCGCGUgg-UCGccGGGCGg -3'
miRNA:   3'- uuuuaUCGUGCGCGaaaAGCu-CUCGC- -5'
6995 5' -48.2 NC_001875.2 + 5540 0.68 0.987931
Target:  5'- cGGAggAGgACGCGCggcaaUUCGAGgAGCGa -3'
miRNA:   3'- -UUUuaUCgUGCGCGaa---AAGCUC-UCGC- -5'
6995 5' -48.2 NC_001875.2 + 43315 0.68 0.987931
Target:  5'- ----cGGCGCGCGCg---CGGGucGGCGu -3'
miRNA:   3'- uuuuaUCGUGCGCGaaaaGCUC--UCGC- -5'
6995 5' -48.2 NC_001875.2 + 114684 0.68 0.987931
Target:  5'- ----cGGCGacCGUGCUUUUCGGGuGCc -3'
miRNA:   3'- uuuuaUCGU--GCGCGAAAAGCUCuCGc -5'
6995 5' -48.2 NC_001875.2 + 87673 0.69 0.984378
Target:  5'- ----cAGCGCGUGCgaaaUCGAggaGAGCGa -3'
miRNA:   3'- uuuuaUCGUGCGCGaaa-AGCU---CUCGC- -5'
6995 5' -48.2 NC_001875.2 + 94478 0.69 0.980081
Target:  5'- ----cGGCGCGCGCg-UUCGcacGAGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCGaaAAGCu--CUCGC- -5'
6995 5' -48.2 NC_001875.2 + 34907 0.69 0.977629
Target:  5'- cGAGAUcaaGGCGCGCcaGUUUUUUGGGuGCGg -3'
miRNA:   3'- -UUUUA---UCGUGCG--CGAAAAGCUCuCGC- -5'
6995 5' -48.2 NC_001875.2 + 55319 0.7 0.974683
Target:  5'- -cAGUGGCGCGCGacggUgaugacgcgccgcUUCGGGGGCGc -3'
miRNA:   3'- uuUUAUCGUGCGCga--A-------------AAGCUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 96602 0.7 0.968943
Target:  5'- ----cAGCGCGCGCUUUUUGu--GCa -3'
miRNA:   3'- uuuuaUCGUGCGCGAAAAGCucuCGc -5'
6995 5' -48.2 NC_001875.2 + 36650 0.7 0.968943
Target:  5'- gAAGAUGGCcgcgucguGCGCGCUgagcUCGGGGcGCGu -3'
miRNA:   3'- -UUUUAUCG--------UGCGCGAaa--AGCUCU-CGC- -5'
6995 5' -48.2 NC_001875.2 + 83794 0.7 0.968943
Target:  5'- --uGUAGCGCGCGCcc-UCGugccuguGGGCGg -3'
miRNA:   3'- uuuUAUCGUGCGCGaaaAGCu------CUCGC- -5'
6995 5' -48.2 NC_001875.2 + 31980 0.7 0.965576
Target:  5'- --uGUGGCGCGCGUacggccggUUUGuGAGCGg -3'
miRNA:   3'- uuuUAUCGUGCGCGaa------AAGCuCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 74120 0.71 0.944886
Target:  5'- ---cUGGCGCGUguucgccuagaGCUggagUUCGAGGGCGc -3'
miRNA:   3'- uuuuAUCGUGCG-----------CGAa---AAGCUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 26785 0.72 0.917374
Target:  5'- ----gAGCgACGCGCcg-UCGAGGGUGg -3'
miRNA:   3'- uuuuaUCG-UGCGCGaaaAGCUCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 129981 0.74 0.875256
Target:  5'- aAAAAUAGCACGCGCcUUUCaaaAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGcucUCGC- -5'
6995 5' -48.2 NC_001875.2 + 17195 0.74 0.875256
Target:  5'- aAAAAUAGCACaCGCcgUUCGcGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGcGCGaaAAGCuCUCGC- -5'
6995 5' -48.2 NC_001875.2 + 79311 0.76 0.744825
Target:  5'- ---cUGGCGCGUGCUUU-CGAuGAGCGc -3'
miRNA:   3'- uuuuAUCGUGCGCGAAAaGCU-CUCGC- -5'
6995 5' -48.2 NC_001875.2 + 130111 0.77 0.712891
Target:  5'- ---cUAGCACaCGCcgUUCGAGAGCGu -3'
miRNA:   3'- uuuuAUCGUGcGCGaaAAGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.