Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6997 | 3' | -58.1 | NC_001875.2 | + | 59032 | 0.69 | 0.593478 |
Target: 5'- aGCGCCUGAGGGGCGaaaUUGCCGCg -3' miRNA: 3'- gCGUGGGCUUUUCGUcccAGCGGCGa -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130135 | 1.03 | 0.003914 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130201 | 1.03 | 0.003914 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130267 | 1.03 | 0.003914 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130561 | 0.99 | 0.007192 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGa- -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCga -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130333 | 0.93 | 0.020495 |
Target: 5'- cCGCACCCaAAAGGCAGGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGcUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130011 | 0.91 | 0.02623 |
Target: 5'- -aCACCCGAAAAGCAGGGUCGuuGCUg -3' miRNA: 3'- gcGUGGGCUUUUCGUCCCAGCggCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101093 | 0.87 | 0.049058 |
Target: 5'- gGCGCCUauAAAAGCGGGGUCGCCGCUg -3' miRNA: 3'- gCGUGGGc-UUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 24365 | 0.75 | 0.324085 |
Target: 5'- uGUAUuuGAAAA-CGGGGUCGCCGUUg -3' miRNA: 3'- gCGUGggCUUUUcGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130495 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130399 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 130075 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101159 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101225 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101291 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101357 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101423 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101489 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101555 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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6997 | 3' | -58.1 | NC_001875.2 | + | 101621 | 1.08 | 0.001853 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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