miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6997 3' -58.1 NC_001875.2 + 113827 0.67 0.744495
Target:  5'- aGCGCuCUGGGAacAGCgggucGGGGUCggGCCGCa -3'
miRNA:   3'- gCGUG-GGCUUU--UCG-----UCCCAG--CGGCGa -5'
6997 3' -58.1 NC_001875.2 + 33916 0.67 0.744495
Target:  5'- aCGUACCCcucgucGAAAcgcAGCGGGcGUCGgCGCc -3'
miRNA:   3'- -GCGUGGG------CUUU---UCGUCC-CAGCgGCGa -5'
6997 3' -58.1 NC_001875.2 + 80293 0.67 0.734778
Target:  5'- uCGCACuuGAcGAGCGccGUCGCCaGCg -3'
miRNA:   3'- -GCGUGggCUuUUCGUccCAGCGG-CGa -5'
6997 3' -58.1 NC_001875.2 + 82187 0.67 0.734778
Target:  5'- uCGUGCUCGAugGGCGccGGcggccgcucguGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUuuUCGU--CC-----------CAGCGGCGA- -5'
6997 3' -58.1 NC_001875.2 + 99366 0.67 0.734778
Target:  5'- gCGCGCCCGccAAGUGGccaaagCGCCGCa -3'
miRNA:   3'- -GCGUGGGCuuUUCGUCcca---GCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 85197 0.67 0.724973
Target:  5'- aGUACUgGAuGAGCcgacGGGcCGCCGCg -3'
miRNA:   3'- gCGUGGgCUuUUCGu---CCCaGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 71945 0.67 0.724973
Target:  5'- gCGCGCuCCGcgc-GCAGccuGUCGCCGCg -3'
miRNA:   3'- -GCGUG-GGCuuuuCGUCc--CAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 105894 0.67 0.715088
Target:  5'- aGUACCCGAu-GGC-GGG-CGCgGCg -3'
miRNA:   3'- gCGUGGGCUuuUCGuCCCaGCGgCGa -5'
6997 3' -58.1 NC_001875.2 + 41008 0.68 0.695116
Target:  5'- gCGCACCU--AAAGCA-GGUCGCCa-- -3'
miRNA:   3'- -GCGUGGGcuUUUCGUcCCAGCGGcga -5'
6997 3' -58.1 NC_001875.2 + 125046 0.68 0.685047
Target:  5'- aGCgACCCGAucuGC-GGGUCGCUGa- -3'
miRNA:   3'- gCG-UGGGCUuuuCGuCCCAGCGGCga -5'
6997 3' -58.1 NC_001875.2 + 102485 0.68 0.685047
Target:  5'- gGCgacgACCCGGAaacggaccacAAGCGGuGGgCGCCGCa -3'
miRNA:   3'- gCG----UGGGCUU----------UUCGUC-CCaGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 116241 0.68 0.669865
Target:  5'- aCGCACCaCGGGAAGCGccuccauGGGaacauacuggcgaCGCCGCa -3'
miRNA:   3'- -GCGUGG-GCUUUUCGU-------CCCa------------GCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 78457 0.68 0.664787
Target:  5'- uGCGCCCGcAAAAGCGcucgcugCGCCGCa -3'
miRNA:   3'- gCGUGGGC-UUUUCGUccca---GCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 16380 0.68 0.654614
Target:  5'- cCGCGCCCGcuAgcucaacgcGGUAGGugcgguguucGUCGCCGCc -3'
miRNA:   3'- -GCGUGGGCuuU---------UCGUCC----------CAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 122733 0.69 0.644422
Target:  5'- gGCGUCCGAGuucguGGCGGGGUuagCGCCGaCUc -3'
miRNA:   3'- gCGUGGGCUUu----UCGUCCCA---GCGGC-GA- -5'
6997 3' -58.1 NC_001875.2 + 93260 0.69 0.634221
Target:  5'- aGCugGCCCGuguAGAGCAGGaugggcaCGCCGCg -3'
miRNA:   3'- gCG--UGGGCu--UUUCGUCCca-----GCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 126516 0.69 0.634221
Target:  5'- cCGCACUCGgcGAGCAGGua-GCgCGCa -3'
miRNA:   3'- -GCGUGGGCuuUUCGUCCcagCG-GCGa -5'
6997 3' -58.1 NC_001875.2 + 43319 0.69 0.613822
Target:  5'- gCGCGCgCGGGucGGCGuGGUUGCCGCc -3'
miRNA:   3'- -GCGUGgGCUUu-UCGUcCCAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 14516 0.69 0.593478
Target:  5'- cCGCugUCGggGgaacuuGGCGGGcaCGCCGCUu -3'
miRNA:   3'- -GCGugGGCuuU------UCGUCCcaGCGGCGA- -5'
6997 3' -58.1 NC_001875.2 + 70256 0.69 0.593478
Target:  5'- gGCGCCCGA---GCc--GUCGCCGCUa -3'
miRNA:   3'- gCGUGGGCUuuuCGuccCAGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.