Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6998 | 3' | -58.1 | NC_001875.2 | + | 4560 | 0.66 | 0.80927 |
Target: 5'- gCGCACgUCGgcAAGCAauGUUGCCGCg -3' miRNA: 3'- -GCGUG-GGCuuUUCGUccCAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 5914 | 0.67 | 0.744495 |
Target: 5'- aGCGCCgGcauGGCGuuGGGUagCGCCGCg -3' miRNA: 3'- gCGUGGgCuuuUCGU--CCCA--GCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 7020 | 0.66 | 0.791432 |
Target: 5'- aGUugCUGGAcguAAGCGaGGUgGCCGCg -3' miRNA: 3'- gCGugGGCUU---UUCGUcCCAgCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 7253 | 0.67 | 0.754115 |
Target: 5'- cCGCGCUgcagCGGccuGGCGcGGGUCGCCGaCg -3' miRNA: 3'- -GCGUGG----GCUuu-UCGU-CCCAGCGGC-Ga -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 11830 | 0.71 | 0.484923 |
Target: 5'- uCGCGCCgGu--GGCGGGGUCGgUGUa -3' miRNA: 3'- -GCGUGGgCuuuUCGUCCCAGCgGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 12326 | 0.66 | 0.80927 |
Target: 5'- aCGCGCCCGGccAGCgAGaGGUCGUguuugacggcuuCGCc -3' miRNA: 3'- -GCGUGGGCUuuUCG-UC-CCAGCG------------GCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 13478 | 0.74 | 0.37036 |
Target: 5'- uCGCACUCGuacAGC-GGGcCGCCGCUg -3' miRNA: 3'- -GCGUGGGCuuuUCGuCCCaGCGGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 14516 | 0.69 | 0.593478 |
Target: 5'- cCGCugUCGggGgaacuuGGCGGGcaCGCCGCUu -3' miRNA: 3'- -GCGugGGCuuU------UCGUCCcaGCGGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 15090 | 0.66 | 0.795047 |
Target: 5'- aGCGCCUGGuuGAGGCGGGGUuuuucuaccaguaugUGuuuCCGCUu -3' miRNA: 3'- gCGUGGGCU--UUUCGUCCCA---------------GC---GGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 16380 | 0.68 | 0.654614 |
Target: 5'- cCGCGCCCGcuAgcucaacgcGGUAGGugcgguguucGUCGCCGCc -3' miRNA: 3'- -GCGUGGGCuuU---------UCGUCC----------CAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 17091 | 0.92 | 0.023508 |
Target: 5'- uCGCACCCGAAAAGCAcGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUcCCAGCGGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 17158 | 0.95 | 0.013946 |
Target: 5'- gGCACCCGAAAAGCAcGGUCGCCGCUg -3' miRNA: 3'- gCGUGGGCUUUUCGUcCCAGCGGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 21086 | 0.67 | 0.754115 |
Target: 5'- aCGCGC------GGCGGcGGUCGCCGCg -3' miRNA: 3'- -GCGUGggcuuuUCGUC-CCAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 24365 | 0.75 | 0.324085 |
Target: 5'- uGUAUuuGAAAA-CGGGGUCGCCGUUg -3' miRNA: 3'- gCGUGggCUUUUcGUCCCAGCGGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 29859 | 0.72 | 0.44776 |
Target: 5'- gGCACCUGGGAAaaCGGGGUCGUCGa- -3' miRNA: 3'- gCGUGGGCUUUUc-GUCCCAGCGGCga -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 33545 | 0.66 | 0.782295 |
Target: 5'- aGCACgCGuu-GGCcacaguGcGGUCGCCGCg -3' miRNA: 3'- gCGUGgGCuuuUCGu-----C-CCAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 33916 | 0.67 | 0.744495 |
Target: 5'- aCGUACCCcucgucGAAAcgcAGCGGGcGUCGgCGCc -3' miRNA: 3'- -GCGUGGG------CUUU---UCGUCC-CAGCgGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 36146 | 0.72 | 0.424469 |
Target: 5'- gCGCGCCCGAGccGUAGauugcgcauuaaaccGGUUGCCGUg -3' miRNA: 3'- -GCGUGGGCUUuuCGUC---------------CCAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 37774 | 0.66 | 0.763627 |
Target: 5'- gCGCAUguuuauggagCUGAAAcAGCAGGugugucguuuGUCGCCGCg -3' miRNA: 3'- -GCGUG----------GGCUUU-UCGUCC----------CAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 38542 | 0.66 | 0.782295 |
Target: 5'- uGCAgCUCGu--GGCcGGGUUGCUGCg -3' miRNA: 3'- gCGU-GGGCuuuUCGuCCCAGCGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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